Variant report

Variant	rs8023845
Chromosome Location	chr15:40414116-40414117
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11853477	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12148261	0.88[GIH][hapmap]
rs1680156	0.92[EUR][1000 genomes]
rs17668261	0.88[GIH][hapmap]
rs17668415	0.88[GIH][hapmap]
rs1801389	0.88[GIH][hapmap]
rs3759843	1.00[CEU][hapmap];1.00[GIH][hapmap];0.89[MEX][hapmap];0.92[TSI][hapmap];0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62018159	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62019961	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62019996	1.00[ASN][1000 genomes]
rs62019997	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62020025	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7173181	0.88[GIH][hapmap]
rs8038982	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530816	chr15:40003136-40586792	Bivalent Enhancer Strong transcription Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
2	nsv428635	chr15:40274500-40436293	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

Variant related diseases (count:1)

Disease	PMID	Source
Chronic lymphocytic leukemia	24292274	GWAS catalog

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:40402000-40418600	Weak transcription	Right Atrium	heart
2	chr15:40408200-40414200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr15:40408400-40416800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr15:40408400-40417000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr15:40408600-40414200	Weak transcription	Placenta	Placenta
6	chr15:40408600-40416600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr15:40409200-40415200	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr15:40411000-40414400	Weak transcription	Primary neutrophils fromperipheralblood	blood
9	chr15:40411400-40416600	Weak transcription	NHEK	skin
10	chr15:40414000-40414600	Enhancers	H9 Cell Line	embryonic stem cell
11	chr15:40414000-40414800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr15:40414000-40415200	Enhancers	Primary monocytes fromperipheralblood	blood
13	chr15:40414000-40415600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr15:40414000-40415600	Enhancers	Primary hematopoietic stem cells short term culture	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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