Variant report

Variant	rs1680156
Chromosome Location	chr15:40447265-40447266
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:40441619..40443769-chr15:40446969..40449341,2	K562	blood:
2	chr15:40441619..40444532-chr15:40445691..40448469,3	K562	blood:
3	chr15:40446320..40448068-chr15:40456241..40458639,2	K562	blood:

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11853477	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11858747	1.00[ASN][1000 genomes]
rs12148261	1.00[ASN][1000 genomes]
rs1494533	1.00[ASN][1000 genomes]
rs17668261	1.00[ASN][1000 genomes]
rs17668415	1.00[ASN][1000 genomes]
rs1801389	0.91[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs3759843	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62018159	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62019961	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62019997	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62020025	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62020027	1.00[ASN][1000 genomes]
rs62020029	1.00[ASN][1000 genomes]
rs62020031	1.00[ASN][1000 genomes]
rs7165187	1.00[ASN][1000 genomes]
rs7171605	1.00[ASN][1000 genomes]
rs7173181	1.00[ASN][1000 genomes]
rs7182070	1.00[ASN][1000 genomes]
rs7183293	1.00[ASN][1000 genomes]
rs74011373	1.00[ASN][1000 genomes]
rs8023415	1.00[ASN][1000 genomes]
rs8023845	0.92[EUR][1000 genomes]
rs8038982	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530816	chr15:40003136-40586792	Bivalent Enhancer Strong transcription Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
2	esv3423229	chr15:40417126-40447686	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:40442800-40448200	Weak transcription	Fetal Kidney	kidney
2	chr15:40443000-40447600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr15:40443000-40447600	Weak transcription	Stomach Mucosa	stomach
4	chr15:40443200-40452800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
5	chr15:40444400-40448400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr15:40445800-40448200	Enhancers	Placenta	Placenta
7	chr15:40446400-40448600	Enhancers	NHEK	skin
8	chr15:40446400-40449400	Enhancers	H1 Cell Line	embryonic stem cell
9	chr15:40446600-40447600	Enhancers	iPS-18 Cell Line	embryonic stem cell
10	chr15:40446600-40448200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr15:40446600-40448800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr15:40446800-40447400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
13	chr15:40446800-40448200	Enhancers	Placenta Amnion	Placenta Amnion
14	chr15:40446800-40448400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr15:40446800-40448400	Enhancers	HMEC	breast
16	chr15:40446800-40448600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr15:40446800-40448800	Enhancers	ES-I3 Cell Line	embryonic stem cell
18	chr15:40446800-40448800	Enhancers	Pancreas	Pancrea
19	chr15:40446800-40450400	Enhancers	H9 Cell Line	embryonic stem cell
20	chr15:40447000-40447400	Weak transcription	GM12878-XiMat	blood
21	chr15:40447000-40447600	Active TSS	HUES64 Cell Line	embryonic stem cell
22	chr15:40447000-40447800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
23	chr15:40447000-40447800	Active TSS	HUES48 Cell Line	embryonic stem cell
24	chr15:40447000-40448200	Enhancers	Sigmoid Colon	Sigmoid Colon
25	chr15:40447000-40448400	Enhancers	Rectal Mucosa Donor 31	rectum
26	chr15:40447000-40448800	Enhancers	Breast Myoepithelial Primary Cells	Breast
27	chr15:40447000-40449800	Weak transcription	Primary neutrophils fromperipheralblood	blood
28	chr15:40447200-40447400	Enhancers	iPS-15b Cell Line	embryonic stem cell
29	chr15:40447200-40447600	Active TSS	iPS-20b Cell Line	embryonic stem cell
30	chr15:40447200-40447800	Active TSS	HUES6 Cell Line	embryonic stem cell
31	chr15:40447200-40448200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
32	chr15:40447200-40448400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
33	chr15:40447200-40448600	Enhancers	Esophagus	oesophagus

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