Variant report

Variant	rs11853499
Chromosome Location	chr15:83634879-83634880
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11853521	0.89[AFR][1000 genomes]
rs11853916	0.82[AFR][1000 genomes]
rs11857742	1.00[YRI][hapmap]
rs1256430	1.00[YRI][hapmap]
rs60314957	0.89[AFR][1000 genomes]
rs73446989	0.81[AFR][1000 genomes]
rs73447001	0.81[AFR][1000 genomes]
rs73451120	0.85[AFR][1000 genomes]
rs73451124	0.85[AFR][1000 genomes]
rs73451128	0.82[AFR][1000 genomes]
rs73451144	0.92[AFR][1000 genomes]
rs73451147	0.92[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040336	chr15:83578947-83768335	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv482308	chr15:83584918-83747362	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:83622000-83635200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr15:83622200-83649400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr15:83629800-83638800	Weak transcription	Psoas Muscle	Psoas
4	chr15:83632800-83637000	Weak transcription	Osteobl	bone
5	chr15:83633000-83637200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr15:83633000-83637200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr15:83633400-83637800	Weak transcription	Skeletal Muscle Female	skeletal muscle
8	chr15:83633400-83638000	Weak transcription	Pancreas	Pancrea
9	chr15:83633400-83638800	Weak transcription	Skeletal Muscle Male	skeletal muscle
10	chr15:83634800-83636000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
11	chr15:83634800-83636200	Enhancers	GM12878-XiMat	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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