Variant report

Variant	rs73451128
Chromosome Location	chr15:83610490-83610491
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:83586586..83589404-chr15:83610320..83612935,3	MCF-7	breast:
2	chr15:83610269..83612055-chr15:83875374..83877470,2	MCF-7	breast:
3	chr15:83604502..83607500-chr15:83609162..83613049,3	K562	blood:
4	chr15:83610228..83612890-chr15:83652094..83656198,6	MCF-7	breast:

Variant related genes	Relation type
ENSG00000166503	Chromatin interaction
ENSG00000103942	Chromatin interaction
ENSG00000169612	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11853499	0.82[AFR][1000 genomes]
rs11853521	0.92[AFR][1000 genomes]
rs11853916	0.85[AFR][1000 genomes]
rs60314957	0.92[AFR][1000 genomes]
rs60714361	0.84[AFR][1000 genomes]
rs73446989	0.85[AFR][1000 genomes]
rs73447001	0.92[AFR][1000 genomes]
rs73451120	0.96[AFR][1000 genomes]
rs73451124	0.96[AFR][1000 genomes]
rs73451144	0.88[AFR][1000 genomes]
rs73451147	0.88[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040336	chr15:83578947-83768335	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv482308	chr15:83584918-83747362	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:83586600-83619400	Weak transcription	Stomach Smooth Muscle	stomach
2	chr15:83588800-83611600	Weak transcription	Right Atrium	heart
3	chr15:83592600-83610600	Weak transcription	Liver	Liver
4	chr15:83606200-83611600	Weak transcription	A549	lung
5	chr15:83606600-83610800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr15:83606600-83611000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr15:83606600-83611200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr15:83606600-83611200	Weak transcription	HSMM	muscle
9	chr15:83606600-83611200	Weak transcription	NH-A	brain
10	chr15:83606600-83613200	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr15:83606600-83618800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr15:83606600-83620000	Weak transcription	Right Ventricle	heart
13	chr15:83606800-83611200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr15:83606800-83611400	Weak transcription	HSMMtube	muscle
15	chr15:83606800-83611600	Weak transcription	Left Ventricle	heart
16	chr15:83607200-83610800	Weak transcription	Psoas Muscle	Psoas
17	chr15:83607600-83610600	Weak transcription	Gastric	stomach
18	chr15:83607600-83610600	Weak transcription	Skeletal Muscle Female	skeletal muscle
19	chr15:83609000-83613800	Enhancers	Pancreas	Pancrea
20	chr15:83610000-83611000	Enhancers	Skeletal Muscle Male	skeletal muscle
21	chr15:83610200-83611400	Enhancers	Esophagus	oesophagus
22	chr15:83610200-83612600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr15:83610400-83612400	Enhancers	HMEC	breast

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