Variant report

Variant	rs73451147
Chromosome Location	chr15:83655977-83655978
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:83620048..83621695-chr15:83654415..83656923,3	MCF-7	breast:
2	chr15:83653840..83656336-chr16:14164975..14167418,2	MCF-7	breast:
3	chr15:83417301..83420117-chr15:83653856..83657124,3	MCF-7	breast:
4	chr15:83517113..83521654-chr15:83652714..83657006,7	MCF-7	breast:
5	chr15:83655503..83657739-chr15:83659649..83661326,2	K562	blood:
6	chr15:83654223..83656996-chr15:83678905..83681492,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000103942	Chromatin interaction
ENSG00000186260	Chromatin interaction
ENSG00000260608	Chromatin interaction
ENSG00000169609	Chromatin interaction
ENSG00000250988	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11853499	0.92[AFR][1000 genomes]
rs11853521	0.96[AFR][1000 genomes]
rs11853916	0.88[AFR][1000 genomes]
rs60314957	0.96[AFR][1000 genomes]
rs60714361	0.80[AFR][1000 genomes]
rs73446942	0.80[AFR][1000 genomes]
rs73446973	0.82[AFR][1000 genomes]
rs73446989	0.88[AFR][1000 genomes]
rs73447001	0.88[AFR][1000 genomes]
rs73451120	0.92[AFR][1000 genomes]
rs73451124	0.92[AFR][1000 genomes]
rs73451128	0.88[AFR][1000 genomes]
rs73451144	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040336	chr15:83578947-83768335	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv482308	chr15:83584918-83747362	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:83654000-83656000	Active TSS	Colonic Mucosa	Colon
2	chr15:83654000-83656400	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr15:83654200-83656000	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr15:83654200-83656000	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr15:83654200-83656000	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr15:83654200-83656000	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
7	chr15:83654200-83656200	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr15:83654400-83656000	Active TSS	Brain Hippocampus Middle	brain
9	chr15:83654400-83656000	Active TSS	Rectal Mucosa Donor 29	rectum
10	chr15:83654400-83656200	Active TSS	Psoas Muscle	Psoas
11	chr15:83654400-83656400	Active TSS	HUES6 Cell Line	embryonic stem cell
12	chr15:83654600-83656000	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr15:83654600-83656000	Active TSS	iPS-18 Cell Line	embryonic stem cell
14	chr15:83654600-83656000	Active TSS	A549	lung
15	chr15:83654600-83656000	Active TSS	NHLF	lung
16	chr15:83654600-83656000	Active TSS	Osteobl	bone
17	chr15:83654600-83656200	Active TSS	HUES48 Cell Line	embryonic stem cell
18	chr15:83654600-83656200	Active TSS	HUES64 Cell Line	embryonic stem cell
19	chr15:83654600-83656200	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr15:83654600-83656200	Active TSS	Pancreatic Islets	Pancreatic Islet
21	chr15:83654600-83656200	Active TSS	Fetal Lung	lung
22	chr15:83654600-83656200	Active TSS	Stomach Smooth Muscle	stomach
23	chr15:83654600-83656200	Active TSS	NHDF-Ad	bronchial
24	chr15:83654600-83656400	Active TSS	iPS-20b Cell Line	embryonic stem cell
25	chr15:83654600-83656400	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr15:83654600-83656600	Active TSS	iPS-15b Cell Line	embryonic stem cell
27	chr15:83654800-83656000	Active TSS	Muscle Satellite Cultured Cells	--
28	chr15:83654800-83656000	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr15:83654800-83656000	Active TSS	K562	blood
30	chr15:83654800-83656000	Active TSS	NH-A	brain
31	chr15:83654800-83656200	Active TSS	GM12878-XiMat	blood
32	chr15:83654800-83656200	Active TSS	HMEC	breast
33	chr15:83655200-83656000	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
34	chr15:83655200-83656000	Flanking Active TSS	Adipose Nuclei	Adipose
35	chr15:83655200-83656200	Flanking Active TSS	Primary hematopoietic stem cells	blood
36	chr15:83655200-83656400	Flanking Active TSS	Primary T cells from cord blood	blood
37	chr15:83655400-83656000	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
38	chr15:83655400-83656000	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
39	chr15:83655400-83656000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
40	chr15:83655400-83656000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
41	chr15:83655400-83656200	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
42	chr15:83655400-83656200	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
43	chr15:83655400-83656400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
44	chr15:83655400-83675400	Weak transcription	Spleen	Spleen
45	chr15:83655600-83656000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
46	chr15:83655600-83656000	Flanking Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
47	chr15:83655600-83656000	Flanking Active TSS	Fetal Adrenal Gland	Adrenal Gland
48	chr15:83655600-83656000	Flanking Active TSS	Fetal Muscle Trunk	muscle
49	chr15:83655600-83656000	Flanking Active TSS	Fetal Muscle Leg	muscle
50	chr15:83655600-83656000	Enhancers	Left Ventricle	heart

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