Variant report

Variant	rs73446942
Chromosome Location	chr15:83541304-83541305
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:83540274..83544098-chr15:83544468..83546572,4	K562	blood:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11853521	0.83[AFR][1000 genomes]
rs60314957	0.83[AFR][1000 genomes]
rs60714361	0.91[AFR][1000 genomes]
rs73446981	0.88[AFR][1000 genomes]
rs73446989	0.92[AFR][1000 genomes]
rs73447001	0.83[AFR][1000 genomes]
rs73451120	0.80[AFR][1000 genomes]
rs73451124	0.80[AFR][1000 genomes]
rs73451144	0.80[AFR][1000 genomes]
rs73451147	0.80[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv469557	chr15:83417763-83560629	Enhancers Genic enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
2	nsv482340	chr15:83417763-83560629	Strong transcription Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
3	nsv471687	chr15:83417764-83560629	Enhancers Flanking Active TSS Genic enhancers Strong transcription Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:83504600-83549400	Weak transcription	Psoas Muscle	Psoas
2	chr15:83506200-83543800	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr15:83514400-83542800	Weak transcription	Primary T cells from cord blood	blood
4	chr15:83519000-83541400	Weak transcription	Brain Anterior Caudate	brain
5	chr15:83519800-83544400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr15:83520000-83543600	Weak transcription	HSMM	muscle
7	chr15:83520000-83549800	Weak transcription	Brain Cingulate Gyrus	brain
8	chr15:83520000-83563800	Weak transcription	Brain Hippocampus Middle	brain
9	chr15:83520200-83542000	Weak transcription	Brain Angular Gyrus	brain
10	chr15:83520200-83547000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr15:83522400-83543400	Weak transcription	Fetal Muscle Trunk	muscle
12	chr15:83522600-83542200	Weak transcription	Fetal Muscle Leg	muscle
13	chr15:83523600-83541400	Weak transcription	Fetal Stomach	stomach
14	chr15:83523600-83558000	Weak transcription	Esophagus	oesophagus
15	chr15:83524600-83567800	Weak transcription	Left Ventricle	heart
16	chr15:83524800-83563800	Weak transcription	Cortex derived primary cultured neurospheres	brain
17	chr15:83526000-83541800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
18	chr15:83528000-83542000	Weak transcription	Skeletal Muscle Female	skeletal muscle
19	chr15:83528000-83544000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr15:83537000-83551400	Weak transcription	Brain Inferior Temporal Lobe	brain
21	chr15:83538000-83549600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
22	chr15:83539000-83541800	Enhancers	Primary hematopoietic stem cells	blood
23	chr15:83539000-83542000	Genic enhancers	Pancreas	Pancrea
24	chr15:83539200-83541600	Enhancers	Primary B cells from peripheral blood	blood
25	chr15:83539200-83542000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr15:83539400-83541600	Enhancers	Primary B cells from cord blood	blood
27	chr15:83540000-83543000	Weak transcription	Fetal Intestine Large	intestine
28	chr15:83540000-83544000	Weak transcription	Osteobl	bone
29	chr15:83540000-83544200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
30	chr15:83540200-83544000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr15:83540200-83544200	Weak transcription	Fetal Intestine Small	intestine
32	chr15:83540200-83545400	Weak transcription	Duodenum Smooth Muscle	Duodenum
33	chr15:83540400-83541800	Weak transcription	HSMMtube	muscle
34	chr15:83540400-83543000	Strong transcription	Skeletal Muscle Male	skeletal muscle
35	chr15:83540400-83544600	Weak transcription	HepG2	liver
36	chr15:83540600-83541400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
37	chr15:83540600-83541400	Weak transcription	Liver	Liver
38	chr15:83540600-83573200	Weak transcription	Right Atrium	heart
39	chr15:83540800-83541400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
40	chr15:83540800-83544000	Strong transcription	Stomach Smooth Muscle	stomach
41	chr15:83540800-83563600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
42	chr15:83541000-83541400	Weak transcription	Gastric	stomach
43	chr15:83541000-83541600	Enhancers	Primary hematopoietic stem cells short term culture	blood
44	chr15:83541000-83542000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
45	chr15:83541000-83542000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
46	chr15:83541000-83542400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
47	chr15:83541000-83566200	Weak transcription	Spleen	Spleen
48	chr15:83541200-83542200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
49	chr15:83541200-83545600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

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