Variant report

Variant	rs60714361
Chromosome Location	chr15:83584960-83584961
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11853521	0.83[AFR][1000 genomes]
rs60314957	0.83[AFR][1000 genomes]
rs73446942	0.91[AFR][1000 genomes]
rs73446981	0.80[AFR][1000 genomes]
rs73446989	0.83[AFR][1000 genomes]
rs73447001	0.92[AFR][1000 genomes]
rs73451120	0.88[AFR][1000 genomes]
rs73451124	0.88[AFR][1000 genomes]
rs73451128	0.84[AFR][1000 genomes]
rs73451144	0.80[AFR][1000 genomes]
rs73451147	0.80[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040336	chr15:83578947-83768335	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv482308	chr15:83584918-83747362	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:83568200-83585400	Weak transcription	Fetal Muscle Trunk	muscle
2	chr15:83570400-83591600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr15:83578000-83585200	Weak transcription	Left Ventricle	heart
4	chr15:83581600-83587200	Enhancers	Skeletal Muscle Female	skeletal muscle
5	chr15:83582600-83585000	Weak transcription	Psoas Muscle	Psoas
6	chr15:83582600-83592600	Enhancers	Liver	Liver
7	chr15:83583000-83587200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr15:83583200-83597200	Enhancers	Pancreas	Pancrea
9	chr15:83583600-83585200	Weak transcription	HepG2	liver
10	chr15:83584400-83585000	Weak transcription	Gastric	stomach
11	chr15:83584400-83586200	Weak transcription	Ovary	ovary
12	chr15:83584800-83586600	Enhancers	Skeletal Muscle Male	skeletal muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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