Variant report

Variant	rs11853709
Chromosome Location	chr15:59751646-59751647
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11071444	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11071445	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11071446	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11853300	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11854967	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11856047	1.00[CEU][hapmap]
rs11857239	0.82[EUR][1000 genomes]
rs11857940	0.90[ASN][1000 genomes]
rs11858284	0.82[EUR][1000 genomes]
rs11858288	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11858794	0.90[ASN][1000 genomes]
rs56327354	0.81[AMR][1000 genomes]
rs71119480	0.82[EUR][1000 genomes]
rs7161900	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs900829	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv527307	chr15:59103328-60018487	Enhancers Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	145 gene(s)	inside rSNPs	diseases
2	nsv904278	chr15:59705005-59784648	Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:59730800-59754800	Weak transcription	Aorta	Aorta
2	chr15:59731400-59752200	Weak transcription	A549	lung
3	chr15:59731600-59753600	Weak transcription	Fetal Brain Female	brain
4	chr15:59731800-59753400	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr15:59735400-59753800	Weak transcription	Primary B cells from cord blood	blood
6	chr15:59736400-59753400	Weak transcription	Brain Angular Gyrus	brain
7	chr15:59736800-59785000	Weak transcription	Fetal Brain Male	brain
8	chr15:59747200-59753400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr15:59748400-59752600	Weak transcription	Brain Substantia Nigra	brain
10	chr15:59749000-59755200	Weak transcription	Rectal Mucosa Donor 29	rectum
11	chr15:59749800-59753600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr15:59749800-59771800	Weak transcription	Left Ventricle	heart
13	chr15:59750000-59753800	Weak transcription	Brain Anterior Caudate	brain
14	chr15:59750400-59753000	Weak transcription	Right Ventricle	heart
15	chr15:59751200-59752400	Enhancers	Fetal Intestine Large	intestine
16	chr15:59751200-59753800	Weak transcription	Brain Cingulate Gyrus	brain
17	chr15:59751600-59752600	Enhancers	Fetal Intestine Small	intestine

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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