Variant report

Variant	rs900829
Chromosome Location	chr15:59708609-59708610
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11071444	0.85[ASN][1000 genomes]
rs11071445	0.85[ASN][1000 genomes]
rs11071446	0.85[ASN][1000 genomes]
rs11853300	0.81[ASN][1000 genomes]
rs11853709	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs11854967	0.85[ASN][1000 genomes]
rs11857940	0.90[ASN][1000 genomes]
rs11858288	0.85[ASN][1000 genomes]
rs11858794	0.90[ASN][1000 genomes]
rs8039836	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv527307	chr15:59103328-60018487	Enhancers Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	145 gene(s)	inside rSNPs	diseases
2	nsv934082	chr15:59608605-59733211	Flanking Active TSS Enhancers Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
3	nsv904275	chr15:59648633-59726610	Bivalent Enhancer Flanking Active TSS Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	n/a
4	nsv904276	chr15:59648633-59743010	Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	n/a
5	nsv524569	chr15:59666992-59712427	Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	n/a
6	nsv904278	chr15:59705005-59784648	Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:59706000-59710400	Weak transcription	Monocytes-CD14+_RO01746	blood
2	chr15:59706000-59712200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
3	chr15:59706600-59710400	Weak transcription	GM12878-XiMat	blood
4	chr15:59706800-59711200	Weak transcription	Primary B cells from cord blood	blood
5	chr15:59707000-59710400	Weak transcription	Primary B cells from peripheral blood	blood
6	chr15:59707000-59710600	Weak transcription	Primary monocytes fromperipheralblood	blood
7	chr15:59708000-59709000	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr15:59708400-59708800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
9	chr15:59708400-59709200	Weak transcription	Fetal Brain Male	brain
10	chr15:59708600-59708800	Bivalent Enhancer	Lung	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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