Variant report

Variant	rs11853896
Chromosome Location	chr15:34518579-34518580
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:13)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:13 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:34391770..34396248-chr15:34515474..34518631,5	K562	blood:
2	chr15:34392855..34396101-chr15:34515904..34518783,5	MCF-7	breast:
3	chr15:34516456..34519073-chr15:34530589..34533176,2	MCF-7	breast:
4	chr15:34393239..34395470-chr15:34515986..34518807,4	MCF-7	breast:
5	chr15:34515223..34518649-chr15:34658701..34662221,4	K562	blood:
6	chr15:34516218..34520145-chr15:34531781..34533965,3	K562	blood:
7	chr15:34498121..34503791-chr15:34514506..34519551,14	K562	blood:
8	chr15:34515788..34518726-chr15:34518893..34520736,3	K562	blood:
9	chr15:34517046..34518726-chr15:34519236..34520864,2	K562	blood:
10	chr15:34516899..34519877-chr15:34627913..34631706,5	K562	blood:
11	chr15:34516899..34519877-chr15:34629611..34631706,2	K562	blood:
12	chr15:34497680..34504001-chr15:34514973..34521212,14	K562	blood:
13	chr15:34516970..34518662-chr15:34536000..34538660,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000134153	Chromatin interaction
ENSG00000140199	Chromatin interaction
ENSG00000182405	Chromatin interaction
ENSG00000134152	Chromatin interaction
ENSG00000176454	Chromatin interaction
ENSG00000128463	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs11853022	1.00[YRI][hapmap]
rs11857295	0.83[AFR][1000 genomes]
rs34098566	1.00[AMR][1000 genomes]
rs9972594	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052804	chr15:34498529-34841447	Active TSS Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	nsv542341	chr15:34498529-34841447	Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
3	nsv1045173	chr15:34501055-34596995	Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Enhancers Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:34516200-34518600	Active TSS	HUES64 Cell Line	embryonic stem cell
2	chr15:34517600-34518600	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr15:34517800-34531200	Weak transcription	Small Intestine	intestine
4	chr15:34518000-34518600	Enhancers	Primary B cells from cord blood	blood
5	chr15:34518000-34518800	Enhancers	Primary T helper cells fromperipheralblood	blood
6	chr15:34518000-34518800	Weak transcription	Ovary	ovary
7	chr15:34518000-34519000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr15:34518000-34519000	Enhancers	Gastric	stomach
9	chr15:34518000-34519200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
10	chr15:34518000-34519200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
11	chr15:34518000-34519600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr15:34518000-34519600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
13	chr15:34518000-34519800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr15:34518000-34520000	Weak transcription	Esophagus	oesophagus
15	chr15:34518000-34520800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr15:34518000-34528000	Weak transcription	Aorta	Aorta
17	chr15:34518000-34532800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr15:34518000-34571800	Weak transcription	Stomach Mucosa	stomach
19	chr15:34518200-34518600	Enhancers	Primary T killer memory cells from peripheral blood	blood
20	chr15:34518200-34518600	Enhancers	HUVEC	blood vessel
21	chr15:34518200-34518800	Enhancers	Pancreatic Islets	Pancreatic Islet
22	chr15:34518200-34519000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr15:34518200-34519000	Weak transcription	Primary T cells from cord blood	blood
24	chr15:34518200-34519000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
25	chr15:34518200-34519000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr15:34518200-34519000	Enhancers	Liver	Liver
27	chr15:34518200-34519000	Enhancers	Fetal Muscle Trunk	muscle
28	chr15:34518200-34519200	Weak transcription	HUES48 Cell Line	embryonic stem cell
29	chr15:34518200-34519200	Enhancers	Fetal Brain Male	brain
30	chr15:34518200-34519400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
31	chr15:34518200-34519400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr15:34518200-34519400	Weak transcription	Duodenum Smooth Muscle	Duodenum
33	chr15:34518200-34519400	Weak transcription	NHDF-Ad	bronchial
34	chr15:34518200-34519600	Weak transcription	H9 Cell Line	embryonic stem cell
35	chr15:34518200-34519600	Weak transcription	Primary hematopoietic stem cells	blood
36	chr15:34518200-34519600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
37	chr15:34518200-34519600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
38	chr15:34518200-34519600	Weak transcription	Fetal Kidney	kidney
39	chr15:34518200-34519600	Weak transcription	Rectal Mucosa Donor 31	rectum
40	chr15:34518200-34519600	Weak transcription	Rectal Smooth Muscle	rectum
41	chr15:34518200-34519600	Weak transcription	HSMMtube	muscle
42	chr15:34518200-34519800	Weak transcription	Primary neutrophils fromperipheralblood	blood
43	chr15:34518200-34519800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
44	chr15:34518200-34519800	Weak transcription	Brain Anterior Caudate	brain
45	chr15:34518200-34520200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
46	chr15:34518200-34520400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
47	chr15:34518200-34521600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
48	chr15:34518200-34521800	Weak transcription	Colonic Mucosa	Colon
49	chr15:34518200-34525600	Weak transcription	Colon Smooth Muscle	Colon
50	chr15:34518200-34528800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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