Variant report

Variant	rs11854331
Chromosome Location	chr15:34023127-34023128
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10519865	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11856964	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11857010	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs12900875	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12902018	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12906433	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12906810	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12909708	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12910679	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12914125	0.88[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs1963234	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs28460434	0.89[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs8027687	0.81[ASN][1000 genomes]
rs9920068	0.94[AMR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043046	chr15:33714908-34321330	Enhancers Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	esv34037	chr15:33732616-34049083	Enhancers ZNF genes & repeats Strong transcription Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:33993000-34034200	Weak transcription	Skeletal Muscle Female	skeletal muscle
2	chr15:33993000-34034600	Weak transcription	Colon Smooth Muscle	Colon
3	chr15:34003000-34023600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr15:34008400-34031000	Weak transcription	Aorta	Aorta
5	chr15:34015200-34030000	Weak transcription	Brain Hippocampus Middle	brain
6	chr15:34017200-34030200	Weak transcription	Fetal Stomach	stomach
7	chr15:34018800-34030200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr15:34019400-34023800	Weak transcription	Stomach Smooth Muscle	stomach
9	chr15:34019400-34030200	Weak transcription	Brain Cingulate Gyrus	brain
10	chr15:34019800-34025600	Weak transcription	Brain Anterior Caudate	brain
11	chr15:34019800-34030200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr15:34019800-34034200	Weak transcription	Skeletal Muscle Male	skeletal muscle
13	chr15:34020200-34023800	Weak transcription	Fetal Muscle Leg	muscle
14	chr15:34021000-34031000	Weak transcription	Fetal Muscle Trunk	muscle
15	chr15:34022400-34025400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
16	chr15:34023000-34023200	Enhancers	Fetal Brain Female	brain
17	chr15:34023000-34023200	Flanking Active TSS	GM12878-XiMat	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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