Variant report

Variant	rs28460434
Chromosome Location	chr15:34020914-34020915
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10519865	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs11854331	0.89[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs11856964	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs11857010	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12900875	0.82[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs12902018	0.82[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs12906433	0.94[ASN][1000 genomes]
rs12906810	0.89[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs12909708	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12910679	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs12914125	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1963234	0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs71462876	0.82[ASN][1000 genomes]
rs8027687	0.84[ASN][1000 genomes]
rs9920068	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043046	chr15:33714908-34321330	Enhancers Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	esv34037	chr15:33732616-34049083	Enhancers ZNF genes & repeats Strong transcription Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv3425835	chr15:34020735-34020934	Weak transcription Strong transcription	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:33993000-34034200	Weak transcription	Skeletal Muscle Female	skeletal muscle
2	chr15:33993000-34034600	Weak transcription	Colon Smooth Muscle	Colon
3	chr15:34003000-34023600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr15:34008400-34031000	Weak transcription	Aorta	Aorta
5	chr15:34014800-34021000	Strong transcription	Fetal Muscle Trunk	muscle
6	chr15:34015200-34030000	Weak transcription	Brain Hippocampus Middle	brain
7	chr15:34017200-34030200	Weak transcription	Fetal Stomach	stomach
8	chr15:34018200-34021600	Weak transcription	Brain Germinal Matrix	brain
9	chr15:34018800-34023000	Weak transcription	Fetal Brain Female	brain
10	chr15:34018800-34030200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr15:34019400-34023800	Weak transcription	Stomach Smooth Muscle	stomach
12	chr15:34019400-34030200	Weak transcription	Brain Cingulate Gyrus	brain
13	chr15:34019800-34021400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
14	chr15:34019800-34025600	Weak transcription	Brain Anterior Caudate	brain
15	chr15:34019800-34030200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr15:34019800-34034200	Weak transcription	Skeletal Muscle Male	skeletal muscle
17	chr15:34020200-34023800	Weak transcription	Fetal Muscle Leg	muscle

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links