Variant report

Variant	rs12910679
Chromosome Location	chr15:34021963-34021964
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:33524756..33527822-chr15:34017984..34022116,3	MCF-7	breast:
2	chr15:33525596..33526762-chr15:34021167..34021992,3	MCF-7	breast:

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10519865	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10519868	1.00[CEU][hapmap];0.82[GIH][hapmap]
rs11854331	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11856964	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11857010	0.95[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12899292	1.00[CEU][hapmap]
rs12900875	0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs12902018	0.84[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs12906433	0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12906584	0.82[CEU][hapmap]
rs12906810	0.82[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.91[TSI][hapmap];0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12908501	1.00[CEU][hapmap];0.82[GIH][hapmap]
rs12909708	1.00[CEU][hapmap];0.95[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];0.83[TSI][hapmap];0.84[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs12914125	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12917360	0.82[CEU][hapmap]
rs1565936	1.00[CEU][hapmap];0.82[GIH][hapmap]
rs1963234	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1963235	1.00[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];0.97[GIH][hapmap];0.89[JPT][hapmap];0.91[TSI][hapmap]
rs2278316	0.82[CEU][hapmap]
rs28460434	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs7172932	0.82[CEU][hapmap];0.82[GIH][hapmap]
rs8027687	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[GIH][hapmap];0.83[JPT][hapmap];0.81[TSI][hapmap];0.81[ASN][1000 genomes]
rs8029059	1.00[CEU][hapmap]
rs9920068	0.95[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043046	chr15:33714908-34321330	Enhancers Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	esv34037	chr15:33732616-34049083	Enhancers ZNF genes & repeats Strong transcription Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:33993000-34034200	Weak transcription	Skeletal Muscle Female	skeletal muscle
2	chr15:33993000-34034600	Weak transcription	Colon Smooth Muscle	Colon
3	chr15:34003000-34023600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr15:34008400-34031000	Weak transcription	Aorta	Aorta
5	chr15:34015200-34030000	Weak transcription	Brain Hippocampus Middle	brain
6	chr15:34017200-34030200	Weak transcription	Fetal Stomach	stomach
7	chr15:34018800-34023000	Weak transcription	Fetal Brain Female	brain
8	chr15:34018800-34030200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr15:34019400-34023800	Weak transcription	Stomach Smooth Muscle	stomach
10	chr15:34019400-34030200	Weak transcription	Brain Cingulate Gyrus	brain
11	chr15:34019800-34025600	Weak transcription	Brain Anterior Caudate	brain
12	chr15:34019800-34030200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr15:34019800-34034200	Weak transcription	Skeletal Muscle Male	skeletal muscle
14	chr15:34020200-34023800	Weak transcription	Fetal Muscle Leg	muscle
15	chr15:34021000-34031000	Weak transcription	Fetal Muscle Trunk	muscle
16	chr15:34021400-34022000	Strong transcription	Breast Myoepithelial Primary Cells	Breast

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