Variant report

Variant	rs12899292
Chromosome Location	chr15:34051110-34051111
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10519865	1.00[CEU][hapmap]
rs10519868	1.00[CEU][hapmap];0.80[CHB][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11856964	0.85[CEU][hapmap]
rs12898419	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12906584	0.82[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12906810	0.82[CEU][hapmap]
rs12908259	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12908501	1.00[CEU][hapmap];0.80[CHB][hapmap];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12909708	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs12910679	1.00[CEU][hapmap]
rs12914125	1.00[CEU][hapmap]
rs12917360	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1565936	1.00[CEU][hapmap];0.80[CHB][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1963235	1.00[CEU][hapmap]
rs2278315	0.82[CEU][hapmap];0.94[CHB][hapmap];0.88[JPT][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2278316	0.85[CEU][hapmap];0.90[CHB][hapmap];0.90[JPT][hapmap];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs34836946	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7172932	0.82[CEU][hapmap];0.84[EUR][1000 genomes]
rs8027687	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs8029059	1.00[CEU][hapmap];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043046	chr15:33714908-34321330	Enhancers Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv456789	chr15:34034421-34426618	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv568920	chr15:34034421-34426618	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
4	nsv471235	chr15:34035529-34421951	Strong transcription Weak transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
5	nsv568921	chr15:34046635-34247622	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:34046600-34051200	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr15:34048600-34051200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
3	chr15:34048800-34051200	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr15:34048800-34051600	Strong transcription	Fetal Muscle Trunk	muscle
5	chr15:34049200-34057000	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr15:34050200-34051200	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr15:34050400-34074200	Weak transcription	Brain Substantia Nigra	brain
8	chr15:34050600-34051200	ZNF genes & repeats	Fetal Stomach	stomach
9	chr15:34050800-34052000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr15:34050800-34063800	Weak transcription	Stomach Smooth Muscle	stomach
11	chr15:34050800-34072400	Weak transcription	Brain Anterior Caudate	brain
12	chr15:34050800-34080200	Weak transcription	Aorta	Aorta
13	chr15:34051000-34072600	Weak transcription	Skeletal Muscle Male	skeletal muscle
14	chr15:34051000-34089200	Weak transcription	Fetal Muscle Leg	muscle

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