Variant report

Variant	rs12917360
Chromosome Location	chr15:34032674-34032675
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10519865	0.85[CEU][hapmap]
rs10519868	0.82[CEU][hapmap];0.84[CHB][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11856964	0.85[CEU][hapmap]
rs12898419	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12899292	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12906584	0.90[EUR][1000 genomes]
rs12908259	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12908501	0.82[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12909708	0.82[CEU][hapmap];0.85[EUR][1000 genomes]
rs12910679	0.82[CEU][hapmap]
rs12914125	1.00[CEU][hapmap]
rs1565936	0.82[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1963235	1.00[CEU][hapmap]
rs2278315	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2278316	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs34836946	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs71462876	0.83[AFR][1000 genomes]
rs7172932	0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8027687	0.82[CEU][hapmap];0.91[EUR][1000 genomes]
rs8029059	0.85[CEU][hapmap];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043046	chr15:33714908-34321330	Enhancers Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	esv34037	chr15:33732616-34049083	Enhancers ZNF genes & repeats Strong transcription Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:33993000-34034200	Weak transcription	Skeletal Muscle Female	skeletal muscle
2	chr15:33993000-34034600	Weak transcription	Colon Smooth Muscle	Colon
3	chr15:34019800-34034200	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr15:34024200-34034800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr15:34025400-34035200	Weak transcription	Fetal Muscle Leg	muscle
6	chr15:34030400-34033400	Strong transcription	Stomach Smooth Muscle	stomach
7	chr15:34030400-34038000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr15:34030600-34033000	Weak transcription	Brain Anterior Caudate	brain
9	chr15:34030600-34034200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr15:34030600-34034200	Weak transcription	Fetal Stomach	stomach
11	chr15:34030600-34034400	Weak transcription	Cortex derived primary cultured neurospheres	brain
12	chr15:34030600-34038200	Weak transcription	Brain Cingulate Gyrus	brain
13	chr15:34030600-34038200	Weak transcription	Brain Inferior Temporal Lobe	brain
14	chr15:34030800-34034600	Weak transcription	Brain Substantia Nigra	brain
15	chr15:34030800-34035200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr15:34030800-34038200	Weak transcription	Brain Hippocampus Middle	brain
17	chr15:34030800-34040000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr15:34031000-34033000	Strong transcription	Fetal Muscle Trunk	muscle
19	chr15:34031000-34033000	Weak transcription	Placenta Amnion	Placenta Amnion
20	chr15:34031000-34034600	Strong transcription	Aorta	Aorta
21	chr15:34031800-34034800	Weak transcription	Duodenum Smooth Muscle	Duodenum
22	chr15:34032200-34034000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
23	chr15:34032400-34041000	Weak transcription	HUES6 Cell Line	embryonic stem cell

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