Variant report

Variant	rs7172932
Chromosome Location	chr15:34036376-34036377
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10519865	0.82[CEU][hapmap]
rs10519868	0.82[CEU][hapmap];0.94[CHB][hapmap];0.92[CHD][hapmap];1.00[GIH][hapmap];0.89[JPT][hapmap];0.89[TSI][hapmap];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12232247	0.83[CHB][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.83[TSI][hapmap];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12899292	0.82[CEU][hapmap];0.84[EUR][1000 genomes]
rs12906584	0.81[CHD][hapmap];0.82[GIH][hapmap];0.85[TSI][hapmap];0.83[EUR][1000 genomes]
rs12906810	0.81[GIH][hapmap]
rs12908259	0.84[EUR][1000 genomes]
rs12908501	0.82[CEU][hapmap];0.94[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.85[TSI][hapmap];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12909708	0.82[CEU][hapmap];0.82[GIH][hapmap]
rs12910679	0.82[CEU][hapmap];0.82[GIH][hapmap]
rs12914125	0.82[CEU][hapmap]
rs12917360	0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1565936	0.82[CEU][hapmap];0.94[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];0.89[TSI][hapmap];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1963235	0.82[CEU][hapmap]
rs2278309	0.84[JPT][hapmap]
rs2278315	0.88[CHB][hapmap];0.82[EUR][1000 genomes]
rs2278316	0.84[CHB][hapmap];0.81[EUR][1000 genomes]
rs34836946	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8027687	0.82[CEU][hapmap];0.82[GIH][hapmap];0.80[TSI][hapmap];0.86[EUR][1000 genomes]
rs8029059	0.82[CEU][hapmap];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043046	chr15:33714908-34321330	Enhancers Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	esv34037	chr15:33732616-34049083	Enhancers ZNF genes & repeats Strong transcription Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv456789	chr15:34034421-34426618	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
4	nsv568920	chr15:34034421-34426618	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
5	nsv471235	chr15:34035529-34421951	Strong transcription Weak transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:34030400-34038000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr15:34030600-34038200	Weak transcription	Brain Cingulate Gyrus	brain
3	chr15:34030600-34038200	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr15:34030800-34038200	Weak transcription	Brain Hippocampus Middle	brain
5	chr15:34030800-34040000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr15:34032400-34041000	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr15:34034600-34048600	Weak transcription	Aorta	Aorta
8	chr15:34034800-34038000	Weak transcription	Brain Substantia Nigra	brain
9	chr15:34034800-34042200	Weak transcription	Brain Germinal Matrix	brain
10	chr15:34034800-34050400	Weak transcription	Colon Smooth Muscle	Colon
11	chr15:34035200-34038400	Weak transcription	Brain Anterior Caudate	brain
12	chr15:34035400-34042200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr15:34035400-34044600	Weak transcription	Duodenum Smooth Muscle	Duodenum
14	chr15:34035600-34036600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr15:34035600-34036800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
16	chr15:34035600-34040200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr15:34035600-34048600	Weak transcription	Skeletal Muscle Female	skeletal muscle
18	chr15:34035600-34049000	Weak transcription	Fetal Stomach	stomach
19	chr15:34035800-34037400	Strong transcription	Stomach Smooth Muscle	stomach
20	chr15:34035800-34040000	Weak transcription	Fetal Muscle Trunk	muscle
21	chr15:34035800-34040000	Weak transcription	Skeletal Muscle Male	skeletal muscle
22	chr15:34036000-34038600	Strong transcription	Fetal Muscle Leg	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links