Variant report

Variant	rs11854682
Chromosome Location	chr15:33740276-33740277
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11858231	0.82[YRI][hapmap]
rs12019024	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs13329442	0.90[EUR][1000 genomes]
rs28416549	0.93[EUR][1000 genomes]
rs28418552	0.93[EUR][1000 genomes]
rs28431065	0.93[EUR][1000 genomes]
rs28465311	0.86[EUR][1000 genomes]
rs28484793	0.86[EUR][1000 genomes]
rs28503200	1.00[EUR][1000 genomes]
rs28503628	0.93[EUR][1000 genomes]
rs28533822	0.93[EUR][1000 genomes]
rs28560228	0.93[EUR][1000 genomes]
rs28570427	1.00[EUR][1000 genomes]
rs28576794	0.93[EUR][1000 genomes]
rs28599649	1.00[EUR][1000 genomes]
rs28642362	1.00[EUR][1000 genomes]
rs56032255	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7169054	1.00[CEU][hapmap]
rs74005628	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533346	chr15:33469439-33809641	Enhancers Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv832964	chr15:33608771-33784018	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Active TSS Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv1043046	chr15:33714908-34321330	Enhancers Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
4	esv34041	chr15:33720726-33871487	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	esv34037	chr15:33732616-34049083	Enhancers ZNF genes & repeats Strong transcription Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:33732800-33746600	Weak transcription	Aorta	Aorta
2	chr15:33733400-33740800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr15:33733400-33746000	Weak transcription	Brain Anterior Caudate	brain
4	chr15:33736200-33740800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr15:33736200-33740800	Weak transcription	NHEK	skin
6	chr15:33738800-33740800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr15:33739200-33742000	Weak transcription	Primary hematopoietic stem cells	blood
8	chr15:33739400-33740600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr15:33739400-33740800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr15:33740000-33743400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr15:33740200-33742200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr15:33740200-33742200	Enhancers	Skeletal Muscle Male	skeletal muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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