Variant report

Variant	rs28560228
Chromosome Location	chr15:33725338-33725339
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11854682	0.93[EUR][1000 genomes]
rs12019024	0.85[EUR][1000 genomes]
rs13329442	0.97[EUR][1000 genomes]
rs28375148	0.84[EUR][1000 genomes]
rs28416549	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28418552	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28431065	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28465311	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs28484793	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs28503200	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs28503628	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs28521278	0.83[AMR][1000 genomes]
rs28533822	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28538078	0.84[EUR][1000 genomes]
rs28570427	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs28576794	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs28599649	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs28642362	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs34115810	0.83[EUR][1000 genomes]
rs56032255	0.97[EUR][1000 genomes]
rs74005628	0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533346	chr15:33469439-33809641	Enhancers Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv832964	chr15:33608771-33784018	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Active TSS Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv568919	chr15:33638335-33736683	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	n/a
4	nsv1043046	chr15:33714908-34321330	Enhancers Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
5	esv34041	chr15:33720726-33871487	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:33717200-33733200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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