Variant report

Variant	rs28484793
Chromosome Location	chr15:33752192-33752193
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11854682	0.86[EUR][1000 genomes]
rs28416549	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs28418552	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs28431065	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs28465311	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28503200	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs28503628	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs28521278	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs28533822	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs28560228	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs28570427	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs28576794	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs28599649	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs28642362	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs28670663	0.85[AMR][1000 genomes]
rs56032255	0.83[EUR][1000 genomes]
rs59884852	0.83[EUR][1000 genomes]
rs7169054	0.86[EUR][1000 genomes]
rs74005628	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533346	chr15:33469439-33809641	Enhancers Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv832964	chr15:33608771-33784018	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Active TSS Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv1043046	chr15:33714908-34321330	Enhancers Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
4	esv34041	chr15:33720726-33871487	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	esv34037	chr15:33732616-34049083	Enhancers ZNF genes & repeats Strong transcription Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:33741600-33765400	Weak transcription	Fetal Muscle Leg	muscle
2	chr15:33747600-33752200	Weak transcription	Fetal Kidney	kidney
3	chr15:33750200-33753200	Enhancers	HMEC	breast
4	chr15:33750400-33753000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr15:33750400-33753000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr15:33750400-33753200	Enhancers	NHEK	skin
7	chr15:33750400-33754000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr15:33751600-33753000	Enhancers	Placenta Amnion	Placenta Amnion
9	chr15:33752000-33755000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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