Variant report

Variant	rs11854849
Chromosome Location	chr15:99795418-99795419
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:61)
Chromatin interactive
region (count:1)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr15:99795399-99795449	IMR90	lung:	fetal
2	chr15:99795399-99795449	Hela-S3	cervix:	n/a
3	chr15:99795399-99795449	GM12892	blood:	n/a
4	chr15:99795399-99795449	HRPEpiC	eye:	n/a
5	chr15:99795399-99795449	T-47D	breast:	n/a
6	chr15:99795399-99795449	SK-N-SH	brain:	n/a
7	chr15:99795399-99795449	HEK293	kidney:	embryo
8	chr15:99795399-99795449	PFSK-1	brain:	n/a
9	chr15:99795399-99795449	Caco-2	colon:	n/a
10	chr15:99795399-99795449	NB4	blood:	n/a
11	chr15:99795399-99795449	SAEC	small airway:	n/a
12	chr15:99795399-99795449	HEEpiC	esophagus:	n/a
13	chr15:99795399-99795449	U87	brain:	n/a
14	chr15:99795399-99795449	BE2_C	brain:	n/a
15	chr15:99795399-99795449	HepG2	liver:	n/a
16	chr15:99795399-99795449	PrEC	prostate:	n/a
17	chr15:99795399-99795449	AG04450	lung:	fetal
18	chr15:99795399-99795449	HCT-116	colon:	n/a
19	chr15:99795399-99795449	NHBE	bronchial:	n/a
20	chr15:99795399-99795449	ECC-1	luminal epithelium:	n/a
21	chr15:99795399-99795449	HL-60	blood:	n/a
22	chr15:99795399-99795449	MCF10A-Er-Src	breast:	n/a
23	chr15:99795399-99795449	K562	blood:	n/a
24	chr15:99795399-99795449	Hepatocyte	liver:	n/a
25	chr15:99795399-99795449	HCF	heart:	n/a
26	chr15:99795399-99795449	GM12878	blood:	n/a
27	chr15:99795399-99795449	HRCEpiC	kidney:	n/a
28	chr15:99795399-99795449	SK-N-MC	brain:	n/a
29	chr15:99795399-99795449	HCM	heart:	n/a
30	chr15:99795399-99795449	H1-hESC	embryonic stem cell:	embryo
31	chr15:99795399-99795449	ovcar-3	ovarian:	n/a
32	chr15:99795399-99795449	AG09309	skin:	n/a
33	chr15:99795399-99795449	BJ	skin:	n/a
34	chr15:99795399-99795449	GM12891	blood:	n/a
35	chr15:99795399-99795449	HIPEpiC	eye:	n/a
36	chr15:99795399-99795449	NT2-D1	testis:	n/a
37	chr15:99795399-99795449	NH-A	brain:	n/a
38	chr15:99795399-99795449	HRE	kidney:	n/a
39	chr15:99795399-99795449	AG09319	gingival:	n/a
40	chr15:99795399-99795449	RPTEC	kidney:	n/a
41	chr15:99795399-99795449	HNPCEpiC	eye:	n/a
42	chr15:99795399-99795449	CMK	blood:	n/a
43	chr15:99795399-99795449	HAEpiC	amniotic membrane:	n/a
44	chr15:99795399-99795449	A549	lung:	n/a
45	chr15:99795399-99795449	PANC-1	pancreas:	n/a
46	chr15:99795399-99795449	GM19239	blood:	n/a
47	chr15:99795399-99795449	AG04449	skin:	fetal
48	chr15:99795399-99795449	Jurkat	blood:	n/a
49	chr15:99795399-99795449	AoSMC	blood vessel:	n/a
50	chr15:99795399-99795449	HCPEpiC	choroid plexus:	n/a

(count:1 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:99791782..99793591-chr15:99794191..99796456,2	K562	blood:

No data

Variant related genes	Relation type
HSP90B2P	CpG island
TTC23	CpG island
ENSG00000264771	CpG island
ENSG00000168904	Chromatin interaction

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11855808	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11856469	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1223952	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13329174	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2100359	0.89[AFR][1000 genomes]
rs2665084	0.89[AFR][1000 genomes]
rs2665085	0.89[AFR][1000 genomes]
rs28419007	1.00[AFR][1000 genomes]
rs28433855	0.93[AFR][1000 genomes]
rs28482159	1.00[AFR][1000 genomes]
rs28622927	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28631063	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28655202	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28669303	1.00[AFR][1000 genomes]
rs28847927	0.89[AFR][1000 genomes]
rs59320851	0.83[AFR][1000 genomes]
rs8041904	1.00[AFR][1000 genomes]
rs9920193	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:18 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531079	chr15:98907913-99878547	Strong transcription Weak transcription Genic enhancers Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	97 gene(s)	inside rSNPs	diseases
2	nsv1039575	chr15:98982045-99924685	Weak transcription Bivalent Enhancer Enhancers Genic enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	96 gene(s)	inside rSNPs	diseases
3	nsv869529	chr15:99416774-99903351	Genic enhancers Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
4	nsv1055008	chr15:99477144-100019861	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
5	nsv1045124	chr15:99504843-99847210	Strong transcription Active TSS Weak transcription Enhancers Genic enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
6	nsv904543	chr15:99513231-99991506	Weak transcription Flanking Active TSS Enhancers Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
7	nsv533926	chr15:99519820-99997114	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
8	nsv915926	chr15:99519820-100138705	Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
9	nsv916822	chr15:99621061-99878564	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
10	nsv949203	chr15:99621061-99932797	Strong transcription Weak transcription Enhancers Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
11	nsv817289	chr15:99621061-100138705	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
12	nsv431411	chr15:99621061-100143999	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
13	nsv570716	chr15:99629901-99916332	Weak transcription Active TSS Transcr. at gene 5' and 3' Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
14	nsv904546	chr15:99696046-100166300	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
15	nsv1052528	chr15:99736977-99874210	Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Active TSS Enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
16	nsv1036346	chr15:99752391-100365458	Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
17	nsv542520	chr15:99752391-100365458	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
18	nsv1045367	chr15:99781626-99892182	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:98 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:99792200-99802800	Weak transcription	Esophagus	oesophagus
2	chr15:99792200-99807400	Weak transcription	Ovary	ovary
3	chr15:99792200-99846400	Weak transcription	Lung	lung
4	chr15:99792400-99804200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr15:99792600-99832200	Weak transcription	Aorta	Aorta
6	chr15:99792800-99796400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr15:99792800-99796400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr15:99792800-99798400	Weak transcription	Colon Smooth Muscle	Colon
9	chr15:99792800-99801600	Weak transcription	Fetal Stomach	stomach
10	chr15:99792800-99802800	Weak transcription	A549	lung
11	chr15:99792800-99804200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr15:99792800-99804600	Weak transcription	Placenta	Placenta
13	chr15:99792800-99847000	Weak transcription	Right Ventricle	heart
14	chr15:99793000-99796000	Weak transcription	Duodenum Smooth Muscle	Duodenum
15	chr15:99793000-99797800	Weak transcription	Fetal Lung	lung
16	chr15:99793000-99799000	Weak transcription	Skeletal Muscle Male	skeletal muscle
17	chr15:99793000-99799400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr15:99793000-99803200	Weak transcription	Brain Hippocampus Middle	brain
19	chr15:99793000-99804200	Weak transcription	Fetal Heart	heart
20	chr15:99793000-99804400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
21	chr15:99793000-99804600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr15:99793000-99805400	Weak transcription	Fetal Brain Female	brain
23	chr15:99793000-99823800	Weak transcription	Fetal Brain Male	brain
24	chr15:99793000-99838000	Weak transcription	Rectal Smooth Muscle	rectum
25	chr15:99793000-99850400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
26	chr15:99793000-99866600	Weak transcription	Gastric	stomach
27	chr15:99793200-99796400	Weak transcription	Left Ventricle	heart
28	chr15:99793200-99797600	Weak transcription	Brain Angular Gyrus	brain
29	chr15:99793200-99804200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr15:99793200-99805600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
31	chr15:99793200-99805800	Weak transcription	Brain Germinal Matrix	brain
32	chr15:99793200-99808000	Weak transcription	Fetal Kidney	kidney
33	chr15:99793200-99822400	Weak transcription	Adipose Nuclei	Adipose
34	chr15:99793400-99803000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
35	chr15:99793800-99796200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
36	chr15:99794000-99796200	Weak transcription	Primary T helper cells fromperipheralblood	blood
37	chr15:99794000-99797400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
38	chr15:99794000-99798400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
39	chr15:99794000-99804200	Weak transcription	Thymus	Thymus
40	chr15:99794000-99804400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
41	chr15:99794000-99804400	Weak transcription	Spleen	Spleen
42	chr15:99794000-99805000	Weak transcription	Primary neutrophils fromperipheralblood	blood
43	chr15:99794000-99808400	Weak transcription	Rectal Mucosa Donor 31	rectum
44	chr15:99794000-99830800	Weak transcription	Fetal Muscle Leg	muscle
45	chr15:99794000-99840000	Weak transcription	Brain Anterior Caudate	brain
46	chr15:99794000-99846400	Weak transcription	Sigmoid Colon	Sigmoid Colon
47	chr15:99794200-99796000	Weak transcription	Monocytes-CD14+_RO01746	blood
48	chr15:99794200-99796400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
49	chr15:99794200-99796600	Weak transcription	Primary T cells from cord blood	blood
50	chr15:99794200-99797600	Weak transcription	Primary T cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links