Variant report

Variant	rs11854949
Chromosome Location	chr15:50978341-50978342
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	TAF1	chr15:50978146-50978459	K562	blood:	n/a	n/a
2	RFX5	chr15:50978153-50979761	Hela-S3	cervix:	n/a	n/a
3	MAX	chr15:50978075-50979750	MCF-7	breast:	n/a	chr15:50979048-50979064 chr15:50978996-50979005
4	MTA3	chr15:50978239-50979031	GM12878	blood:	n/a	n/a
5	E2F6	chr15:50978088-50979695	K562	blood:	n/a	chr15:50978960-50978969 chr15:50979100-50979109 chr15:50979052-50979066
6	RCOR1	chr15:50978234-50979543	Hela-S3	cervix:	n/a	n/a
7	POLR2A	chr15:50978162-50979277	K562	blood:	n/a	n/a
8	PAX5	chr15:50978290-50979472	GM12892	blood:	n/a	chr15:50979100-50979109 chr15:50978956-50978965 chr15:50979332-50979359 chr15:50979058-50979067
9	CHD2	chr15:50978300-50979648	H1-hESC	embryonic stem cell:	n/a	chr15:50978538-50978548
10	CHD1	chr15:50978222-50979500	GM12878	blood:	n/a	chr15:50978538-50978548
11	SIN3AK20	chr15:50977466-50980443	MCF-7	breast:	n/a	n/a
12	TAF1	chr15:50978329-50979326	H1-neurons	neurons:	n/a	n/a
13	CTCF	chr15:50978220-50978370	AG09309	skin:	n/a	n/a
14	MAX	chr15:50978284-50979601	HCT-116	colon:	n/a	chr15:50979048-50979064 chr15:50978996-50979005
15	POU2F2	chr15:50978182-50979416	GM12878	blood:	n/a	n/a
16	BHLHE40	chr15:50978197-50979635	HepG2	liver:	n/a	chr15:50979045-50979054 chr15:50979044-50979057 chr15:50978822-50978838 chr15:50979046-50979055 chr15:50978960-50978976
17	CTCF	chr15:50978280-50978430	HBMEC	blood vessel:	n/a	n/a
18	RCOR1	chr15:50977930-50980006	K562	blood:	n/a	n/a
19	ZEB1	chr15:50978169-50978771	GM12878	blood:	n/a	n/a
20	POLR2A	chr15:50978003-50979732	H1-hESC	embryonic stem cell:	n/a	n/a
21	RCOR1	chr15:50978229-50979740	GM12878	blood:	n/a	n/a
22	MAX	chr15:50978099-50979679	K562	blood:	n/a	chr15:50979048-50979064 chr15:50978996-50979005
23	E2F6	chr15:50978180-50979400	K562	blood:	n/a	chr15:50978960-50978969 chr15:50979100-50979109 chr15:50979052-50979066
24	POLR2A	chr15:50978169-50979455	H1-hESC	embryonic stem cell:	n/a	n/a
25	CTCF	chr15:50978300-50978450	AG04449	skin:	n/a	n/a
26	CTCF	chr15:50978240-50978390	AG04450	lung:	n/a	n/a
27	POLR2A	chr15:50978293-50978363	ProgFib	skin:	n/a	n/a
28	POLR2A	chr15:50978153-50979478	H1-neurons	neurons:	n/a	n/a
29	RELA	chr15:50977926-50979599	GM12891	blood:	n/a	n/a
30	GABPA	chr15:50978229-50979001	A549	lung:	n/a	chr15:50978960-50978969
31	TBP	chr15:50978166-50979502	H1-hESC	embryonic stem cell:	n/a	n/a
32	SIN3A	chr15:50978011-50979654	GM12878	blood:	n/a	chr15:50979045-50979054 chr15:50978996-50979005
33	CEBPB	chr15:50978256-50979686	Hela-S3	cervix:	n/a	chr15:50979356-50979373
34	MYC	chr15:50978315-50979536	Hela-S3	cervix:	n/a	chr15:50979048-50979064 chr15:50978996-50979005
35	HMGN3	chr15:50978202-50979420	K562	blood:	n/a	chr15:50978325-50978332
36	E2F4	chr15:50978335-50979401	K562	blood:	n/a	chr15:50978960-50978969 chr15:50979100-50979109 chr15:50979052-50979066
37	ELF1	chr15:50978339-50979258	K562	blood:	n/a	chr15:50978963-50978975 chr15:50978827-50978839 chr15:50978967-50978976 chr15:50978815-50978827
38	SIN3AK20	chr15:50977698-50979682	MCF-7	breast:	n/a	n/a
39	MAX	chr15:50978069-50979672	HCT-116	colon:	n/a	chr15:50979048-50979064 chr15:50978996-50979005
40	CTCF	chr15:50978203-50979373	GM12878	blood:	n/a	chr15:50978824-50978837
41	TAF1	chr15:50978259-50979505	H1-hESC	embryonic stem cell:	n/a	n/a
42	POLR2A	chr15:50978245-50979575	IMR90	lung:	n/a	n/a
43	JUND	chr15:50978225-50979497	A549	lung:	n/a	n/a
44	POLR2A	chr15:50978222-50979378	HEK293	kidney:	n/a	n/a
45	TAF1	chr15:50978281-50979451	HepG2	liver:	n/a	n/a
46	USF2	chr15:50978243-50979662	GM12878	blood:	n/a	chr15:50979045-50979054 chr15:50979044-50979057 chr15:50979044-50979055 chr15:50978822-50978838 chr15:50979046-50979055 chr15:50978996-50979007 chr15:50978960-50978976
47	MTA3	chr15:50977773-50980208	GM12878	blood:	n/a	n/a
48	CHD2	chr15:50978184-50979560	Hela-S3	cervix:	n/a	chr15:50978538-50978548
49	POLR2A	chr15:50978200-50979689	K562	blood:	n/a	n/a
50	STAT1	chr15:50978331-50979519	GM12878	blood:	n/a	chr15:50979147-50979155

No.	Distal block	Cell Line	Cell type
1	chr15:50650545..50654228-chr15:50976566..50979826,3	MCF-7	breast:
2	chr15:50977313..50978812-chr15:51169055..51169789,4	MCF-7	breast:
3	chr15:50977419..50980911-chr15:51055926..51058477,4	K562	blood:
4	chr15:50977442..50979922-chr15:51198976..51201748,2	MCF-7	breast:
5	chr15:50977828..50980537-chr15:51197788..51202411,5	MCF-7	breast:
6	chr15:50977199..50979864-chr15:51198670..51201821,3	K562	blood:
7	chr15:50977319..50980700-chr15:51053372..51060901,7	MCF-7	breast:
8	chr15:50977014..50979307-chr16:3505643..3508008,2	MCF-7	breast:
9	chr15:50976192..50979125-chr15:51038150..51041035,2	K562	blood:
10	chr15:50978167..50979033-chr3:171757700..171758531,2	Hela-S3	cervix:
11	chr15:50976295..50981465-chr15:51052766..51059546,15	MCF-7	breast:
12	chr15:50977709..50979057-chr15:51056941..51058049,3	MCF-7	breast:
13	chr15:50977395..50978757-chr15:51177504..51178749,6	MCF-7	breast:
14	chr15:50645819..50647987-chr15:50977616..50981646,3	MCF-7	breast:
15	chr1:174968276..174969269-chr15:50978167..50978813,2	Hela-S3	cervix:
16	chr15:50645260..50648664-chr15:50977679..50981268,7	MCF-7	breast:
17	chr15:50977199..50981459-chr15:51198510..51202863,6	K562	blood:
18	chr15:50977048..50978856-chr15:51005682..51008712,3	K562	blood:
19	chr15:50977757..50980171-chr22:36876614..36879193,2	MCF-7	breast:

Variant related genes	Relation type
RN7SL354P	TF binding region
ENSG00000122390	Chromatin interaction
ENSG00000116161	Chromatin interaction
ENSG00000244879	Chromatin interaction
ENSG00000104064	Chromatin interaction
ENSG00000259773	Chromatin interaction
ENSG00000081014	Chromatin interaction
ENSG00000259715	Chromatin interaction
ENSG00000264109	Chromatin interaction
ENSG00000262621	Chromatin interaction
ENSG00000075420	Chromatin interaction
ENSG00000100348	Chromatin interaction
ENSG00000138600	Chromatin interaction

Extended variants
information (count: 134 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:107)

rs_ID	r²[population]
rs10519284	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs1052459	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs11635825	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs11854486	0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11858096	0.96[ASN][1000 genomes]
rs11858301	0.90[ASN][1000 genomes]
rs12898588	1.00[CHB][hapmap];0.94[JPT][hapmap];0.96[ASN][1000 genomes]
rs12899074	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12899181	0.90[ASN][1000 genomes]
rs12899321	0.82[ASN][1000 genomes]
rs12899517	0.90[ASN][1000 genomes]
rs12899580	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12899581	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12899700	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12899943	0.96[ASN][1000 genomes]
rs12900933	0.85[CHB][hapmap];0.94[JPT][hapmap];0.88[ASN][1000 genomes]
rs12901275	1.00[AFR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12901621	1.00[AFR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12903573	0.84[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs12904103	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12904263	0.89[EUR][1000 genomes]
rs12904353	0.82[CHB][hapmap];0.94[JPT][hapmap];0.80[ASN][1000 genomes]
rs12904617	0.94[ASN][1000 genomes]
rs12904729	0.84[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs12905120	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12905474	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12905720	0.84[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs12906219	0.84[ASN][1000 genomes]
rs12906675	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12906820	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12907202	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12907387	0.82[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12907472	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12907922	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12908546	1.00[CEU][hapmap];0.85[CHB][hapmap];0.87[JPT][hapmap];0.84[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs12908572	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12909927	0.98[ASN][1000 genomes]
rs12910276	0.98[ASN][1000 genomes]
rs12910613	0.92[ASN][1000 genomes]
rs12911654	1.00[CEU][hapmap];0.86[CHB][hapmap];0.93[JPT][hapmap];0.84[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs12911753	0.87[JPT][hapmap];0.83[ASN][1000 genomes]
rs12912192	0.82[CHB][hapmap];0.94[JPT][hapmap]
rs12912763	0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12912793	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12912835	0.84[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs12912841	0.84[ASN][1000 genomes]
rs12912921	0.84[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs12913081	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12913464	0.86[ASN][1000 genomes]
rs12913494	0.94[ASN][1000 genomes]
rs12913657	0.96[ASN][1000 genomes]
rs12913733	0.84[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs12915001	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12915606	0.92[ASN][1000 genomes]
rs12916113	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12916122	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12916510	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs16973487	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs28641162	0.96[ASN][1000 genomes]
rs2928138	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs34885055	0.92[ASN][1000 genomes]
rs35148930	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35178604	1.00[AFR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs35314460	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs35597009	0.80[ASN][1000 genomes]
rs35725584	0.98[ASN][1000 genomes]
rs35753060	1.00[AFR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35849698	0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs36071575	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs480328	0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs485324	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes]
rs514449	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs515637	0.86[EUR][1000 genomes]
rs531366	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes]
rs537485	0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs540257	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs543821	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs555569	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes]
rs600724	0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs602908	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs615835	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs623639	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs623652	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs623722	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs625022	0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs646171	0.84[EUR][1000 genomes]
rs646856	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6493449	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs67588397	0.90[ASN][1000 genomes]
rs687549	0.87[EUR][1000 genomes]
rs71395001	0.87[ASN][1000 genomes]
rs71395002	0.98[ASN][1000 genomes]
rs71397503	0.84[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs71397504	0.84[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs7165492	1.00[CHB][hapmap];0.94[JPT][hapmap];0.96[ASN][1000 genomes]
rs7165684	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7167290	0.93[EUR][1000 genomes]
rs7170445	0.90[ASN][1000 genomes]
rs7173321	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7179565	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7179641	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs8029941	0.90[ASN][1000 genomes]
rs8037161	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs8037587	0.90[ASN][1000 genomes]
rs8042919	0.82[CEU][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes]
rs9920018	0.90[ASN][1000 genomes]
rs9920083	0.84[AMR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:27 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045456	chr15:50592472-51019873	Strong transcription Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	121 gene(s)	inside rSNPs	diseases
2	nsv948579	chr15:50645530-51045564	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	119 gene(s)	inside rSNPs	diseases
3	nsv1053966	chr15:50715572-51133186	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	65 gene(s)	inside rSNPs	diseases
4	nsv542383	chr15:50715572-51133186	Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	65 gene(s)	inside rSNPs	diseases
5	nsv1043805	chr15:50715572-51208891	Genic enhancers Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
6	nsv542384	chr15:50715572-51208891	Strong transcription Flanking Active TSS Weak transcription Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
7	nsv1047443	chr15:50744781-51647023	Strong transcription Active TSS Weak transcription Genic enhancers Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
8	nsv1051990	chr15:50745814-51133186	Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
9	nsv1054970	chr15:50761410-51036625	Strong transcription Weak transcription ZNF genes & repeats Enhancers Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
10	nsv457134	chr15:50770868-51184583	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
11	nsv471242	chr15:50770868-51184583	Genic enhancers ZNF genes & repeats Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
12	nsv569396	chr15:50770868-51184583	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
13	nsv457135	chr15:50770868-51189707	ZNF genes & repeats Enhancers Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
14	nsv569397	chr15:50770868-51189707	Strong transcription Active TSS Weak transcription Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
15	nsv1048621	chr15:50775451-51115535	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
16	nsv1047039	chr15:50782070-51187804	Enhancers Strong transcription Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
17	nsv542385	chr15:50782070-51187804	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
18	nsv457136	chr15:50789125-51294995	Strong transcription ZNF genes & repeats Weak transcription Active TSS Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
19	nsv569398	chr15:50789125-51294995	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
20	nsv431389	chr15:50795835-50979738	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
21	nsv1036081	chr15:50818569-51097229	Strong transcription Active TSS Transcr. at gene 5' and 3' Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
22	nsv1055112	chr15:50822035-51133186	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
23	nsv1042372	chr15:50846461-51208891	Strong transcription Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
24	nsv542386	chr15:50846461-51208891	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
25	nsv569399	chr15:50874964-51562198	Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Strong transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	70 gene(s)	inside rSNPs	diseases
26	nsv569400	chr15:50874964-51767265	ZNF genes & repeats Weak transcription Strong transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
27	nsv1051400	chr15:50890333-51046283	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:50976800-50979800	Active TSS	Right Ventricle	heart
2	chr15:50977000-50979400	Active TSS	iPS-20b Cell Line	embryonic stem cell
3	chr15:50977000-50979800	Active TSS	Breast Myoepithelial Primary Cells	Breast
4	chr15:50977000-50980200	Active TSS	ES-I3 Cell Line	embryonic stem cell
5	chr15:50977000-50980400	Active TSS	GM12878-XiMat	blood
6	chr15:50977200-50978400	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
7	chr15:50977200-50978400	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr15:50977200-50978400	Flanking Active TSS	HUVEC	blood vessel
9	chr15:50977200-50979200	Active TSS	H1 Cell Line	embryonic stem cell
10	chr15:50977200-50979200	Active TSS	Rectal Mucosa Donor 29	rectum
11	chr15:50977200-50979400	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr15:50977200-50979400	Active TSS	K562	blood
13	chr15:50977200-50979800	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr15:50977200-50979800	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr15:50977200-50980000	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr15:50977400-50978400	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
17	chr15:50977400-50978600	Active TSS	Right Atrium	heart
18	chr15:50977400-50978800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr15:50977400-50979200	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr15:50977400-50979200	Active TSS	HMEC	breast
21	chr15:50977400-50979200	Active TSS	NHEK	skin
22	chr15:50977400-50979200	Active TSS	NHLF	lung
23	chr15:50977400-50979400	Active TSS	HUES6 Cell Line	embryonic stem cell
24	chr15:50977400-50979400	Active TSS	HUES64 Cell Line	embryonic stem cell
25	chr15:50977400-50979400	Active TSS	iPS-15b Cell Line	embryonic stem cell
26	chr15:50977400-50979400	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr15:50977400-50979400	Active TSS	HSMM	muscle
28	chr15:50977400-50979400	Active TSS	NHDF-Ad	bronchial
29	chr15:50977400-50979600	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
30	chr15:50977400-50979600	Active TSS	HUES48 Cell Line	embryonic stem cell
31	chr15:50977400-50979600	Active TSS	Fetal Heart	heart
32	chr15:50977400-50979600	Active TSS	Left Ventricle	heart
33	chr15:50977400-50979800	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
34	chr15:50977400-50980400	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr15:50977600-50978400	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
36	chr15:50977600-50978400	Flanking Active TSS	Primary T cells from cord blood	blood
37	chr15:50977600-50978400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
38	chr15:50977600-50978400	Flanking Active TSS	Adipose Nuclei	Adipose
39	chr15:50977600-50978400	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
40	chr15:50977600-50978400	Flanking Active TSS	Stomach Smooth Muscle	stomach
41	chr15:50977600-50978400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
42	chr15:50977600-50978600	Flanking Active TSS	Primary B cells from cord blood	blood
43	chr15:50977600-50978800	Flanking Active TSS	Primary hematopoietic stem cells	blood
44	chr15:50977600-50978800	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
45	chr15:50977600-50979000	Transcr. at gene 5' and 3'	Primary T helper 17 cells PMA-I stimulated	--
46	chr15:50977600-50979400	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
47	chr15:50977600-50979400	Active TSS	Fetal Intestine Small	intestine
48	chr15:50977600-50979400	Active TSS	Fetal Kidney	kidney
49	chr15:50977600-50979400	Active TSS	Pancreatic Islets	Pancreatic Islet
50	chr15:50977600-50979600	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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