Variant report

Variant	rs11855278
Chromosome Location	chr15:76731901-76731902
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs11852564	1.00[AMR][1000 genomes]
rs11852924	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11853618	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11854128	0.94[AFR][1000 genomes]
rs11854576	1.00[AMR][1000 genomes]
rs11854945	1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11855368	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11855652	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11855816	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11855872	1.00[YRI][hapmap]
rs11855983	1.00[YRI][hapmap]
rs11856029	1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11856332	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11856365	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11856541	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs11856757	1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11857289	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11858492	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11858674	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11858683	1.00[AMR][1000 genomes]
rs7165845	1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8028397	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8028406	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8028566	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8033284	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8034980	1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8041004	1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv542438	chr15:76697056-76892157	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:76711600-76767200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr15:76717000-76739000	Weak transcription	Gastric	stomach
3	chr15:76718000-76732800	Weak transcription	Brain Hippocampus Middle	brain
4	chr15:76718800-76732000	Weak transcription	Fetal Stomach	stomach
5	chr15:76718800-76736200	Weak transcription	Lung	lung
6	chr15:76720800-76763600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr15:76721600-76740200	Weak transcription	Primary B cells from cord blood	blood
8	chr15:76721800-76734600	Weak transcription	Brain Anterior Caudate	brain
9	chr15:76723000-76739400	Weak transcription	Fetal Intestine Small	intestine
10	chr15:76723000-76757600	Weak transcription	Aorta	Aorta
11	chr15:76724600-76749400	Weak transcription	Primary hematopoietic stem cells	blood
12	chr15:76725200-76733400	Weak transcription	Liver	Liver
13	chr15:76725800-76754400	Weak transcription	Ovary	ovary
14	chr15:76725800-76812600	Weak transcription	Left Ventricle	heart
15	chr15:76726000-76747200	Weak transcription	Primary T cells from cord blood	blood
16	chr15:76726400-76733800	Weak transcription	Fetal Heart	heart
17	chr15:76730800-76733000	Enhancers	HUES48 Cell Line	embryonic stem cell
18	chr15:76731200-76732200	Enhancers	ES-I3 Cell Line	embryonic stem cell
19	chr15:76731200-76733200	Enhancers	HUES64 Cell Line	embryonic stem cell
20	chr15:76731400-76732200	Enhancers	H1 Cell Line	embryonic stem cell
21	chr15:76731400-76732200	Enhancers	HUES6 Cell Line	embryonic stem cell
22	chr15:76731400-76732800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
23	chr15:76731600-76732200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr15:76731600-76732600	Enhancers	iPS-15b Cell Line	embryonic stem cell
25	chr15:76731600-76732600	Enhancers	iPS-20b Cell Line	embryonic stem cell
26	chr15:76731600-76732800	Enhancers	iPS-18 Cell Line	embryonic stem cell
27	chr15:76731600-76733000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr15:76731800-76732000	Enhancers	Brain Inferior Temporal Lobe	brain
29	chr15:76731800-76732200	Enhancers	H9 Cell Line	embryonic stem cell
30	chr15:76731800-76732200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
31	chr15:76731800-76732200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
32	chr15:76731800-76732400	Weak transcription	Fetal Lung	lung

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