Variant report

Variant	rs11855872
Chromosome Location	chr15:76561808-76561809
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:76561447..76562984-chr15:76571466..76573118,2	K562	blood:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11855278	1.00[YRI][hapmap]
rs11858510	0.90[AFR][1000 genomes]
rs7169372	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833057	chr15:76367848-76585868	ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Weak transcription Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv527608	chr15:76530267-76562738	ZNF genes & repeats Weak transcription Strong transcription Enhancers Active TSS Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:76550400-76563000	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr15:76550600-76562600	ZNF genes & repeats	Primary monocytes fromperipheralblood	blood
3	chr15:76550600-76563000	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
4	chr15:76550600-76563200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr15:76550600-76563400	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
6	chr15:76550600-76563400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr15:76550600-76563600	ZNF genes & repeats	Fetal Intestine Small	intestine
8	chr15:76550600-76564000	ZNF genes & repeats	Primary hematopoietic stem cells	blood
9	chr15:76550600-76578400	Strong transcription	Liver	Liver
10	chr15:76553400-76562800	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr15:76553400-76563200	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
12	chr15:76553600-76563200	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr15:76553800-76562600	ZNF genes & repeats	Primary B cells from cord blood	blood
14	chr15:76553800-76564200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr15:76554000-76563800	ZNF genes & repeats	Dnd41	blood
16	chr15:76554200-76562600	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
17	chr15:76554200-76562600	ZNF genes & repeats	Fetal Lung	lung
18	chr15:76554600-76563000	ZNF genes & repeats	Primary B cells from peripheral blood	blood
19	chr15:76555000-76562600	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr15:76555000-76563200	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr15:76555200-76562800	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr15:76555800-76563200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr15:76555800-76564200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr15:76555800-76564400	Weak transcription	Right Ventricle	heart
25	chr15:76555800-76567200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr15:76555800-76574200	Strong transcription	Primary T cells fromperipheralblood	blood
27	chr15:76555800-76578800	Weak transcription	Psoas Muscle	Psoas
28	chr15:76555800-76579000	Weak transcription	NHLF	lung
29	chr15:76555800-76586000	Weak transcription	Stomach Mucosa	stomach
30	chr15:76556000-76563600	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
31	chr15:76556000-76564000	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr15:76556200-76562000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
33	chr15:76556200-76563200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr15:76556200-76565200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
35	chr15:76556200-76569800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
36	chr15:76556400-76581400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr15:76556800-76594600	Weak transcription	Esophagus	oesophagus
38	chr15:76557000-76567200	Strong transcription	Hela-S3	cervix
39	chr15:76557000-76582800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
40	chr15:76557200-76563200	ZNF genes & repeats	GM12878-XiMat	blood
41	chr15:76557600-76562200	Weak transcription	NH-A	brain
42	chr15:76557600-76573400	Strong transcription	Rectal Mucosa Donor 31	rectum
43	chr15:76558000-76564400	Weak transcription	NHDF-Ad	bronchial
44	chr15:76558000-76603000	Weak transcription	Aorta	Aorta
45	chr15:76558200-76565000	Strong transcription	Primary T cells from cord blood	blood
46	chr15:76558400-76562000	ZNF genes & repeats	Fetal Thymus	thymus
47	chr15:76558400-76568200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
48	chr15:76558600-76562200	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
49	chr15:76558800-76562600	Weak transcription	HMEC	breast
50	chr15:76558800-76563000	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast

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