Variant report

Variant	rs11858510
Chromosome Location	chr15:76607415-76607416
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:76586485..76588241-chr15:76606261..76609045,2	K562	blood:
2	chr15:76605907..76608754-chr15:76611748..76613276,2	K562	blood:
3	chr15:76601284..76605220-chr15:76605803..76613495,17	K562	blood:
4	chr15:76606947..76607819-chr15:76622249..76623219,2	MCF-7	breast:
5	chr15:76601574..76614388-chr15:76623703..76634730,38	K562	blood:
6	chr15:76600511..76607655-chr15:76613791..76629933,32	MCF-7	breast:
7	chr15:76605423..76608075-chr15:76608528..76612438,4	MCF-7	breast:
8	chr15:76601310..76610583-chr15:76618699..76634643,40	K562	blood:

No data

No data

No data

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11853971	1.00[YRI][hapmap]
rs11855872	0.90[AFR][1000 genomes]
rs7169372	0.90[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv520069	chr15:76602212-76609181	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:76604200-76608000	Enhancers	Placenta	Placenta
2	chr15:76604200-76608800	Weak transcription	Right Atrium	heart
3	chr15:76604200-76609000	Weak transcription	Primary T cells from cord blood	blood
4	chr15:76604200-76613600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr15:76604400-76613600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr15:76606400-76609000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr15:76606600-76607800	Enhancers	Hela-S3	cervix
8	chr15:76606600-76610400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr15:76606600-76610400	Weak transcription	NHEK	skin
10	chr15:76606600-76611600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr15:76606600-76612200	Weak transcription	K562	blood
12	chr15:76607400-76607800	Flanking Active TSS	A549	lung
13	chr15:76607400-76607800	Enhancers	HepG2	liver

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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