Variant report

Variant	rs7169372
Chromosome Location	chr15:76583678-76583679
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:76583048..76585196-chr15:76627041..76629277,2	MCF-7	breast:
2	chr15:76582923..76594852-chr15:76601949..76606997,18	MCF-7	breast:
3	chr15:76577914..76580283-chr15:76582309..76584434,2	K562	blood:

Variant related genes	Relation type
ENSG00000159556	Chromatin interaction
ENSG00000140374	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs11855872	1.00[AFR][1000 genomes]
rs11858510	0.90[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833057	chr15:76367848-76585868	ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Weak transcription Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:105 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:76555800-76586000	Weak transcription	Stomach Mucosa	stomach
2	chr15:76556800-76594600	Weak transcription	Esophagus	oesophagus
3	chr15:76558000-76603000	Weak transcription	Aorta	Aorta
4	chr15:76561000-76587600	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr15:76562000-76591600	Weak transcription	Small Intestine	intestine
6	chr15:76562600-76586000	Weak transcription	Brain Angular Gyrus	brain
7	chr15:76563000-76586400	Weak transcription	Fetal Heart	heart
8	chr15:76563200-76590800	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr15:76569000-76585200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr15:76569000-76586400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
11	chr15:76569400-76585000	Strong transcription	Fetal Intestine Large	intestine
12	chr15:76569800-76591600	Weak transcription	Spleen	Spleen
13	chr15:76571200-76586400	Weak transcription	Placenta Amnion	Placenta Amnion
14	chr15:76572600-76585800	Weak transcription	Brain Anterior Caudate	brain
15	chr15:76573200-76592200	Weak transcription	Fetal Kidney	kidney
16	chr15:76573200-76593200	Weak transcription	Right Ventricle	heart
17	chr15:76574600-76585200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr15:76574800-76590600	Weak transcription	Ovary	ovary
19	chr15:76574800-76591600	Weak transcription	Gastric	stomach
20	chr15:76574800-76591600	Weak transcription	Lung	lung
21	chr15:76574800-76601400	Weak transcription	Pancreas	Pancrea
22	chr15:76574800-76602000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr15:76575000-76586000	Weak transcription	Brain Inferior Temporal Lobe	brain
24	chr15:76575800-76585200	Strong transcription	Primary monocytes fromperipheralblood	blood
25	chr15:76575800-76585200	Strong transcription	Monocytes-CD14+_RO01746	blood
26	chr15:76576000-76585200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
27	chr15:76576000-76585600	Weak transcription	HUVEC	blood vessel
28	chr15:76576000-76585800	Weak transcription	Brain Hippocampus Middle	brain
29	chr15:76576200-76602800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
30	chr15:76576400-76586200	Weak transcription	Cortex derived primary cultured neurospheres	brain
31	chr15:76576600-76585800	Weak transcription	NH-A	brain
32	chr15:76577400-76585400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
33	chr15:76579000-76586000	Weak transcription	Brain Cingulate Gyrus	brain
34	chr15:76579200-76584400	Weak transcription	A549	lung
35	chr15:76579200-76585600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
36	chr15:76579200-76586000	Weak transcription	Brain Substantia Nigra	brain
37	chr15:76579200-76586200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
38	chr15:76579200-76591600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
39	chr15:76579200-76602000	Weak transcription	Thymus	Thymus
40	chr15:76579400-76585600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
41	chr15:76579400-76585800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
42	chr15:76579400-76586200	Weak transcription	Rectal Smooth Muscle	rectum
43	chr15:76579400-76587200	Weak transcription	NHLF	lung
44	chr15:76579400-76591000	Weak transcription	Duodenum Smooth Muscle	Duodenum
45	chr15:76579400-76592600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
46	chr15:76579400-76592800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
47	chr15:76579600-76585600	Weak transcription	Primary T helper cells PMA-I stimulated	--
48	chr15:76579600-76586000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
49	chr15:76579600-76587200	Weak transcription	Psoas Muscle	Psoas
50	chr15:76579600-76592000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood

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