Variant report

Variant	rs11855799
Chromosome Location	chr15:75766322-75766323
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOS	chr15:75766234-75766433	MCF10A-Er-Src	breast:	n/a	n/a
2	FOS	chr15:75766276-75766451	MCF10A-Er-Src	breast:	n/a	n/a

Variant related genes	Relation type
PTPN9	TF binding region

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11855880	1.00[EUR][1000 genomes]
rs11856221	1.00[AFR][1000 genomes]
rs3803464	1.00[JPT][hapmap];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3803465	0.90[JPT][hapmap];1.00[MEX][hapmap];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7162587	1.00[ASW][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7179862	1.00[ASW][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs8036649	1.00[ASW][hapmap]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531901	chr15:75600108-76019966	Genic enhancers Flanking Active TSS Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	166 gene(s)	inside rSNPs	diseases
2	esv3445070	chr15:75623136-76045948	Enhancers Active TSS Weak transcription Genic enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	165 gene(s)	inside rSNPs	diseases
3	nsv530345	chr15:75628556-75951011	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	158 gene(s)	inside rSNPs	diseases
4	nsv1048028	chr15:75637515-76019967	Strong transcription Genic enhancers Weak transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	161 gene(s)	inside rSNPs	diseases
5	nsv542436	chr15:75637515-76019967	Strong transcription Weak transcription Flanking Active TSS Genic enhancers Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	161 gene(s)	inside rSNPs	diseases
6	nsv482802	chr15:75686519-75899896	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	70 gene(s)	inside rSNPs	diseases
7	esv1800424	chr15:75692303-75991451	Flanking Active TSS Strong transcription Weak transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	124 gene(s)	inside rSNPs	diseases
8	nsv904387	chr15:75706296-75806911	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
9	nsv531902	chr15:75724505-75919237	Flanking Active TSS Strong transcription Weak transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
10	nsv904388	chr15:75730182-75804543	Active TSS Flanking Active TSS Enhancers Strong transcription Weak transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
11	nsv904389	chr15:75739824-75806911	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
12	nsv827390	chr15:75766087-75795370	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:75749000-75797800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
2	chr15:75749200-75776800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr15:75749200-75782000	Weak transcription	Right Atrium	heart
4	chr15:75754400-75770800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr15:75755200-75772400	Strong transcription	Cortex derived primary cultured neurospheres	brain
6	chr15:75755200-75772400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr15:75755200-75772600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr15:75755400-75772400	Strong transcription	Fetal Muscle Leg	muscle
9	chr15:75755600-75769800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr15:75755600-75772800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr15:75756200-75772400	Strong transcription	Fetal Stomach	stomach
12	chr15:75756200-75772600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr15:75756200-75772600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
14	chr15:75756400-75766600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr15:75756400-75766600	Strong transcription	Fetal Intestine Large	intestine
16	chr15:75756400-75772600	Strong transcription	Fetal Muscle Trunk	muscle
17	chr15:75756600-75772800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr15:75756800-75769800	Strong transcription	Duodenum Mucosa	Duodenum
19	chr15:75757200-75767600	Strong transcription	Dnd41	blood
20	chr15:75757200-75770400	Strong transcription	Rectal Mucosa Donor 31	rectum
21	chr15:75757400-75772400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
22	chr15:75757600-75769600	Strong transcription	HUES64 Cell Line	embryonic stem cell
23	chr15:75757800-75766800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
24	chr15:75757800-75767200	Strong transcription	Muscle Satellite Cultured Cells	--
25	chr15:75757800-75768600	Strong transcription	Stomach Smooth Muscle	stomach
26	chr15:75757800-75769800	Strong transcription	HUES6 Cell Line	embryonic stem cell
27	chr15:75757800-75769800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
28	chr15:75757800-75769800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr15:75757800-75772600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr15:75758000-75766600	Strong transcription	Primary B cells from peripheral blood	blood
31	chr15:75758000-75767400	Strong transcription	Primary B cells from cord blood	blood
32	chr15:75758000-75767400	Strong transcription	Rectal Mucosa Donor 29	rectum
33	chr15:75758000-75769400	Strong transcription	H1 Cell Line	embryonic stem cell
34	chr15:75758000-75769400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
35	chr15:75758000-75772400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
36	chr15:75758000-75772400	Strong transcription	Liver	Liver
37	chr15:75758000-75772400	Strong transcription	Osteobl	bone
38	chr15:75758000-75772600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
39	chr15:75758000-75772800	Strong transcription	Primary monocytes fromperipheralblood	blood
40	chr15:75758200-75766400	Strong transcription	Colonic Mucosa	Colon
41	chr15:75758200-75766600	Strong transcription	Brain Hippocampus Middle	brain
42	chr15:75758200-75768200	Strong transcription	Duodenum Smooth Muscle	Duodenum
43	chr15:75758200-75768400	Strong transcription	Primary T helper cells fromperipheralblood	blood
44	chr15:75758200-75769600	Strong transcription	Fetal Thymus	thymus
45	chr15:75758200-75769800	Strong transcription	HUES48 Cell Line	embryonic stem cell
46	chr15:75758200-75770000	Strong transcription	Sigmoid Colon	Sigmoid Colon
47	chr15:75758200-75772200	Strong transcription	Primary T cells fromperipheralblood	blood
48	chr15:75758400-75766800	Strong transcription	Fetal Lung	lung
49	chr15:75758400-75768400	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
50	chr15:75758400-75769400	Strong transcription	Placenta	Placenta

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