Variant report

Variant	rs3803465
Chromosome Location	chr15:75632360-75632361
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:75627872..75630229-chr15:75632244..75633902,2	MCF-7	breast:
2	chr15:75630795..75633486-chr15:75658867..75660629,2	K562	blood:
3	chr15:75628015..75635137-chr15:75659177..75662618,8	MCF-7	breast:
4	chr15:75631781..75634096-chr15:75645857..75648692,2	K562	blood:

Variant related genes	Relation type
ENSG00000140365	Chromatin interaction
ENSG00000140400	Chromatin interaction
ENSG00000140398	Chromatin interaction
ENSG00000260274	Chromatin interaction
ENSG00000260591	Chromatin interaction
ENSG00000207636	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11853961	0.95[AMR][1000 genomes]
rs11855799	0.90[JPT][hapmap];1.00[MEX][hapmap];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11855880	1.00[EUR][1000 genomes]
rs11857278	0.95[AMR][1000 genomes]
rs3803464	0.90[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61539627	0.89[AMR][1000 genomes]
rs7162587	0.90[JPT][hapmap];1.00[MEX][hapmap];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7173927	0.95[AMR][1000 genomes]
rs7175454	0.95[AMR][1000 genomes]
rs7179862	0.90[JPT][hapmap];1.00[MEX][hapmap];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7180003	0.95[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039713	chr15:75394213-75674389	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	96 gene(s)	inside rSNPs	diseases
2	nsv1037713	chr15:75401213-75665304	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	96 gene(s)	inside rSNPs	diseases
3	nsv482859	chr15:75493899-75688451	Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	94 gene(s)	inside rSNPs	diseases
4	nsv1035829	chr15:75504534-75692417	Weak transcription Active TSS Strong transcription Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
5	nsv977736	chr15:75509295-75632679	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
6	nsv531901	chr15:75600108-76019966	Genic enhancers Flanking Active TSS Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	166 gene(s)	inside rSNPs	diseases
7	esv3445070	chr15:75623136-76045948	Enhancers Active TSS Weak transcription Genic enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	165 gene(s)	inside rSNPs	diseases
8	nsv530345	chr15:75628556-75951011	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	158 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:111 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:75629200-75636200	Weak transcription	Primary hematopoietic stem cells	blood
2	chr15:75629200-75638800	Weak transcription	Primary B cells from cord blood	blood
3	chr15:75629200-75639000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
4	chr15:75629200-75639000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
5	chr15:75629200-75639000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
6	chr15:75629200-75639200	Weak transcription	Aorta	Aorta
7	chr15:75629200-75639200	Weak transcription	Small Intestine	intestine
8	chr15:75629400-75632400	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr15:75629400-75634800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr15:75629400-75635000	Weak transcription	Monocytes-CD14+_RO01746	blood
11	chr15:75629400-75636200	Weak transcription	Primary monocytes fromperipheralblood	blood
12	chr15:75629400-75637600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
13	chr15:75629400-75638400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
14	chr15:75629400-75638800	Weak transcription	Primary T helper cells PMA-I stimulated	--
15	chr15:75629400-75639000	Weak transcription	Brain Angular Gyrus	brain
16	chr15:75629400-75639000	Weak transcription	Colonic Mucosa	Colon
17	chr15:75629400-75639000	Weak transcription	Colon Smooth Muscle	Colon
18	chr15:75629400-75639000	Weak transcription	Rectal Smooth Muscle	rectum
19	chr15:75629400-75639200	Weak transcription	Duodenum Smooth Muscle	Duodenum
20	chr15:75629400-75639200	Weak transcription	Rectal Mucosa Donor 31	rectum
21	chr15:75629400-75639200	Weak transcription	NH-A	brain
22	chr15:75629400-75639400	Weak transcription	HSMM	muscle
23	chr15:75629400-75639400	Weak transcription	NHDF-Ad	bronchial
24	chr15:75629600-75633400	Weak transcription	K562	blood
25	chr15:75629600-75638600	Weak transcription	Primary T helper cells fromperipheralblood	blood
26	chr15:75629600-75639000	Weak transcription	GM12878-XiMat	blood
27	chr15:75629600-75639000	Weak transcription	HepG2	liver
28	chr15:75629600-75639000	Weak transcription	HUVEC	blood vessel
29	chr15:75629600-75639600	Weak transcription	Hela-S3	cervix
30	chr15:75630200-75632400	Genic enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr15:75630200-75633600	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
32	chr15:75630200-75633800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
33	chr15:75630200-75635000	Strong transcription	Fetal Stomach	stomach
34	chr15:75630400-75632600	Strong transcription	iPS DF 19.11 Cell Line	embryonic stem cell
35	chr15:75630400-75633600	Strong transcription	Rectal Mucosa Donor 29	rectum
36	chr15:75630400-75634200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
37	chr15:75630400-75638200	Weak transcription	Primary T cells fromperipheralblood	blood
38	chr15:75630600-75632600	Strong transcription	Lung	lung
39	chr15:75630800-75632600	Strong transcription	Sigmoid Colon	Sigmoid Colon
40	chr15:75630800-75632800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
41	chr15:75630800-75632800	Strong transcription	Right Ventricle	heart
42	chr15:75630800-75633400	Strong transcription	Skeletal Muscle Male	skeletal muscle
43	chr15:75630800-75633600	Strong transcription	HUES6 Cell Line	embryonic stem cell
44	chr15:75630800-75633600	Strong transcription	Dnd41	blood
45	chr15:75630800-75633800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
46	chr15:75630800-75633800	Strong transcription	Cortex derived primary cultured neurospheres	brain
47	chr15:75630800-75633800	Strong transcription	Fetal Intestine Large	intestine
48	chr15:75630800-75634000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
49	chr15:75630800-75634000	Strong transcription	Brain Germinal Matrix	brain
50	chr15:75630800-75634200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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