Variant report

Variant	rs7179862
Chromosome Location	chr15:75742530-75742531
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:12)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:12 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:75741578..75748624-chr15:75927989..75935113,20	K562	blood:
2	chr15:75657601..75665504-chr15:75739437..75749700,27	K562	blood:
3	chr15:75741664..75745730-chr15:75869940..75872786,3	MCF-7	breast:
4	chr15:75742140..75749687-chr15:75929409..75934974,27	MCF-7	breast:
5	chr15:75658070..75664945-chr15:75741625..75749756,25	K562	blood:
6	chr15:75741052..75746522-chr15:75930202..75934500,7	MCF-7	breast:
7	chr15:75741578..75748579-chr15:75928515..75935579,16	K562	blood:
8	chr15:75726359..75728321-chr15:75740878..75743039,2	K562	blood:
9	chr15:75741711..75746813-chr15:75868980..75872679,7	MCF-7	breast:
10	chr15:75640869..75642530-chr15:75742504..75744688,2	K562	blood:
11	chr15:75656095..75662590-chr15:75739456..75750037,27	MCF-7	breast:
12	chr15:75657484..75665083-chr15:75741604..75749517,41	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000140400	Chromatin interaction
ENSG00000169410	Chromatin interaction
ENSG00000177971	Chromatin interaction
ENSG00000260206	Chromatin interaction
ENSG00000260274	Chromatin interaction
ENSG00000140398	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11855799	1.00[ASW][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11855880	1.00[EUR][1000 genomes]
rs11856221	1.00[AFR][1000 genomes]
rs3803464	1.00[JPT][hapmap];1.00[YRI][hapmap];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3803465	0.90[JPT][hapmap];1.00[MEX][hapmap];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7162587	1.00[ASW][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531901	chr15:75600108-76019966	Genic enhancers Flanking Active TSS Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	166 gene(s)	inside rSNPs	diseases
2	esv3445070	chr15:75623136-76045948	Enhancers Active TSS Weak transcription Genic enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	165 gene(s)	inside rSNPs	diseases
3	nsv530345	chr15:75628556-75951011	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	158 gene(s)	inside rSNPs	diseases
4	nsv1048028	chr15:75637515-76019967	Strong transcription Genic enhancers Weak transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	161 gene(s)	inside rSNPs	diseases
5	nsv542436	chr15:75637515-76019967	Strong transcription Weak transcription Flanking Active TSS Genic enhancers Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	161 gene(s)	inside rSNPs	diseases
6	nsv482802	chr15:75686519-75899896	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	70 gene(s)	inside rSNPs	diseases
7	esv1800424	chr15:75692303-75991451	Flanking Active TSS Strong transcription Weak transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	124 gene(s)	inside rSNPs	diseases
8	nsv904387	chr15:75706296-75806911	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
9	nsv531902	chr15:75724505-75919237	Flanking Active TSS Strong transcription Weak transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
10	nsv904388	chr15:75730182-75804543	Active TSS Flanking Active TSS Enhancers Strong transcription Weak transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
11	nsv904389	chr15:75739824-75806911	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
12	nsv827389	chr15:75741918-75749453	Enhancers Active TSS Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	61 gene(s)	inside rSNPs	diseases
13	esv3423390	chr15:75742324-75744872	Active TSS Flanking Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:75717000-75742600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr15:75721200-75742600	Weak transcription	Aorta	Aorta
3	chr15:75723000-75742600	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr15:75728800-75742600	Weak transcription	Esophagus	oesophagus
5	chr15:75735600-75742600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
6	chr15:75736000-75742800	Weak transcription	Lung	lung
7	chr15:75736200-75742600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr15:75740000-75742600	Weak transcription	Brain Angular Gyrus	brain
9	chr15:75741600-75742600	Enhancers	Stomach Mucosa	stomach
10	chr15:75741600-75743000	Flanking Active TSS	Hela-S3	cervix
11	chr15:75741600-75743200	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
12	chr15:75741600-75748800	Active TSS	Ovary	ovary
13	chr15:75741800-75742600	Enhancers	Primary B cells from peripheral blood	blood
14	chr15:75741800-75742600	Flanking Active TSS	Stomach Smooth Muscle	stomach
15	chr15:75741800-75743000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr15:75741800-75743200	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr15:75741800-75749000	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr15:75742000-75742600	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
19	chr15:75742000-75742600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
20	chr15:75742000-75742600	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr15:75742000-75742600	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
22	chr15:75742000-75742600	Enhancers	Brain Cingulate Gyrus	brain
23	chr15:75742000-75742600	Enhancers	Brain Inferior Temporal Lobe	brain
24	chr15:75742000-75742600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
25	chr15:75742000-75742600	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
26	chr15:75742000-75742600	Weak transcription	Small Intestine	intestine
27	chr15:75742000-75742600	Flanking Active TSS	GM12878-XiMat	blood
28	chr15:75742000-75742800	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr15:75742000-75743000	Flanking Active TSS	Primary T cells from cord blood	blood
30	chr15:75742000-75743000	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr15:75742000-75743000	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
32	chr15:75742000-75743000	Flanking Active TSS	Dnd41	blood
33	chr15:75742000-75743000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
34	chr15:75742000-75743200	Flanking Active TSS	Duodenum Mucosa	Duodenum
35	chr15:75742000-75744800	Active TSS	iPS-18 Cell Line	embryonic stem cell
36	chr15:75742000-75748800	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
37	chr15:75742200-75742600	Flanking Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
38	chr15:75742200-75742600	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
39	chr15:75742200-75742600	Weak transcription	Brain Anterior Caudate	brain
40	chr15:75742200-75742600	Flanking Active TSS	Colon Smooth Muscle	Colon
41	chr15:75742200-75742600	Flanking Active TSS	Fetal Muscle Trunk	muscle
42	chr15:75742200-75742600	Enhancers	Gastric	stomach
43	chr15:75742200-75742600	Flanking Active TSS	Thymus	Thymus
44	chr15:75742200-75742600	Enhancers	Spleen	Spleen
45	chr15:75742200-75742600	Active TSS	HSMM	muscle
46	chr15:75742200-75742600	Flanking Active TSS	Osteobl	bone
47	chr15:75742200-75742800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
48	chr15:75742200-75742800	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
49	chr15:75742200-75742800	Active TSS	HepG2	liver
50	chr15:75742200-75743000	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--

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