Variant report

Variant	rs11856993
Chromosome Location	chr15:79147641-79147642
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11853058	1.00[AMR][1000 genomes]
rs11854790	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11857815	1.00[AMR][1000 genomes]
rs11857964	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2082764	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2869820	1.00[AMR][1000 genomes]
rs4283202	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60132959	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61433603	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6495350	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7166142	0.82[AFR][1000 genomes]
rs7172767	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7180086	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74024489	1.00[AMR][1000 genomes]
rs74024491	1.00[AMR][1000 genomes]
rs74024492	1.00[AMR][1000 genomes]
rs8023320	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8025166	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8027614	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8028433	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8039160	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917303	chr15:78491050-79205255	Enhancers Genic enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	122 gene(s)	inside rSNPs	diseases
2	nsv904431	chr15:79006442-79155088	Bivalent/Poised TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	esv33573	chr15:79053484-79293881	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
4	nsv904432	chr15:79066932-79175813	Active TSS Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:79143800-79152200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr15:79143800-79152200	Weak transcription	Brain Substantia Nigra	brain
3	chr15:79143800-79152200	Weak transcription	Fetal Lung	lung
4	chr15:79144000-79152000	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr15:79146800-79147800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr15:79147000-79147800	Enhancers	HepG2	liver
7	chr15:79147000-79148000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr15:79147000-79148000	Enhancers	Osteobl	bone
9	chr15:79147000-79148600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr15:79147000-79149200	Enhancers	NHDF-Ad	bronchial
11	chr15:79147400-79148800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr15:79147400-79148800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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