Variant report

Variant	rs11857394
Chromosome Location	chr15:74186934-74186935
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs13638	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4537969	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs66538876	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7170291	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs72745338	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72745342	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72745343	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72745346	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043335	chr15:74078689-74241186	Weak transcription Flanking Active TSS Strong transcription Enhancers Bivalent Enhancer Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:74185200-74187000	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr15:74186000-74188600	Enhancers	Brain Germinal Matrix	brain
3	chr15:74186200-74188600	Enhancers	Duodenum Mucosa	Duodenum
4	chr15:74186600-74188400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr15:74186800-74187800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr15:74186800-74190000	Weak transcription	H1 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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