Variant report

Variant	rs66538876
Chromosome Location	chr15:74187157-74187158
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11857394	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13638	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4283181	0.97[ASN][1000 genomes]
rs4464030	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4537969	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4558370	1.00[ASN][1000 genomes]
rs59374297	0.81[AFR][1000 genomes]
rs72745335	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs72745338	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72745342	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72745343	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72745345	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72745346	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72745353	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043335	chr15:74078689-74241186	Weak transcription Flanking Active TSS Strong transcription Enhancers Bivalent Enhancer Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:74186000-74188600	Enhancers	Brain Germinal Matrix	brain
2	chr15:74186200-74188600	Enhancers	Duodenum Mucosa	Duodenum
3	chr15:74186600-74188400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr15:74186800-74187800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr15:74186800-74190000	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr15:74187000-74187200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr15:74187000-74188200	Enhancers	Cortex derived primary cultured neurospheres	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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