Variant report

Variant	rs59374297
Chromosome Location	chr15:74186225-74186226
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11629922	1.00[AMR][1000 genomes]
rs12902790	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs1452393	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs1452395	1.00[AMR][1000 genomes]
rs2053960	1.00[AMR][1000 genomes]
rs2123210	0.83[AMR][1000 genomes]
rs4886713	1.00[AMR][1000 genomes]
rs57510724	1.00[AMR][1000 genomes]
rs59404362	1.00[AMR][1000 genomes]
rs60206098	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs66538876	0.81[AFR][1000 genomes]
rs7168488	1.00[AMR][1000 genomes]
rs7176250	1.00[AMR][1000 genomes]
rs7178358	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs744617	0.83[AMR][1000 genomes]
rs744620	0.83[AMR][1000 genomes]
rs744621	0.83[AMR][1000 genomes]
rs8033356	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043335	chr15:74078689-74241186	Weak transcription Flanking Active TSS Strong transcription Enhancers Bivalent Enhancer Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:74185200-74187000	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr15:74185400-74186800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr15:74186000-74188600	Enhancers	Brain Germinal Matrix	brain
4	chr15:74186200-74188600	Enhancers	Duodenum Mucosa	Duodenum

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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