Variant report

Variant	rs11629922
Chromosome Location	chr15:74158719-74158720
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:74157808..74159622-chr15:74181931..74184133,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000222064	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs12902790	0.83[AMR][1000 genomes]
rs1377064	0.88[AFR][1000 genomes]
rs1452393	0.83[AMR][1000 genomes]
rs1452395	1.00[AMR][1000 genomes]
rs2053960	1.00[AMR][1000 genomes]
rs2123210	0.83[AMR][1000 genomes]
rs4886713	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57510724	1.00[AMR][1000 genomes]
rs59374297	1.00[AMR][1000 genomes]
rs59404362	1.00[AMR][1000 genomes]
rs60206098	1.00[AMR][1000 genomes]
rs7168488	1.00[AMR][1000 genomes]
rs7176250	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7178358	0.83[AMR][1000 genomes]
rs744617	0.83[AMR][1000 genomes]
rs744620	0.83[AMR][1000 genomes]
rs744621	0.83[AMR][1000 genomes]
rs8032096	0.88[AFR][1000 genomes]
rs8033356	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043335	chr15:74078689-74241186	Weak transcription Flanking Active TSS Strong transcription Enhancers Bivalent Enhancer Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:74154800-74167000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr15:74155000-74159000	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr15:74155000-74159000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr15:74155000-74159000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr15:74155000-74159400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr15:74155000-74159600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr15:74155200-74159000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr15:74157800-74159200	Enhancers	Thymus	Thymus
9	chr15:74157800-74159600	Enhancers	Fetal Thymus	thymus
10	chr15:74158000-74158800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
11	chr15:74158000-74159000	Enhancers	Primary T helper naive cells from peripheral blood	blood
12	chr15:74158000-74160000	Enhancers	Fetal Intestine Large	intestine
13	chr15:74158200-74158800	Enhancers	Stomach Mucosa	stomach
14	chr15:74158200-74159000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
15	chr15:74158200-74159600	Enhancers	Duodenum Mucosa	Duodenum
16	chr15:74158200-74159800	Enhancers	Fetal Intestine Small	intestine
17	chr15:74158400-74158800	Weak transcription	H1 Cell Line	embryonic stem cell
18	chr15:74158400-74158800	Enhancers	Primary T cells from cord blood	blood
19	chr15:74158400-74159200	Enhancers	Gastric	stomach
20	chr15:74158400-74159200	Enhancers	HepG2	liver
21	chr15:74158400-74160000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
22	chr15:74158600-74159400	Enhancers	H9 Cell Line	embryonic stem cell
23	chr15:74158600-74164600	Enhancers	Right Atrium	heart

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