Variant report

Variant	rs7168488
Chromosome Location	chr15:74207505-74207506
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:74201015..74203312-chr15:74205773..74208210,2	MCF-7	breast:

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11629922	1.00[AMR][1000 genomes]
rs12902790	0.83[AMR][1000 genomes]
rs1452393	0.83[AMR][1000 genomes]
rs1452395	1.00[AMR][1000 genomes]
rs2053960	1.00[AMR][1000 genomes]
rs2123210	0.83[AMR][1000 genomes]
rs4886713	1.00[AMR][1000 genomes]
rs57510724	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59374297	1.00[AMR][1000 genomes]
rs59404362	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60206098	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7176250	1.00[AMR][1000 genomes]
rs7178358	0.83[AMR][1000 genomes]
rs7182614	0.82[AFR][1000 genomes]
rs744617	0.83[AMR][1000 genomes]
rs744620	0.83[AMR][1000 genomes]
rs744621	0.83[AMR][1000 genomes]
rs8033356	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043335	chr15:74078689-74241186	Weak transcription Flanking Active TSS Strong transcription Enhancers Bivalent Enhancer Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv1603	chr15:74191222-74235733	Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:54 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:74192600-74214000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr15:74195800-74210200	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr15:74197000-74208600	Weak transcription	Thymus	Thymus
4	chr15:74198200-74215200	Weak transcription	Pancreas	Pancrea
5	chr15:74199200-74216200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
6	chr15:74199600-74208600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr15:74199800-74208600	Weak transcription	NHLF	lung
8	chr15:74199800-74211200	Weak transcription	NH-A	brain
9	chr15:74199800-74211400	Weak transcription	Osteobl	bone
10	chr15:74199800-74213800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr15:74200000-74208200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr15:74200000-74210200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
13	chr15:74200400-74208600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
14	chr15:74200600-74208600	Weak transcription	HSMM	muscle
15	chr15:74200600-74212200	Weak transcription	Fetal Heart	heart
16	chr15:74200800-74210200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr15:74200800-74210400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
18	chr15:74200800-74210400	Weak transcription	NHDF-Ad	bronchial
19	chr15:74201000-74210400	Weak transcription	Stomach Smooth Muscle	stomach
20	chr15:74201200-74211000	Weak transcription	Muscle Satellite Cultured Cells	--
21	chr15:74202800-74210400	Weak transcription	Primary T helper cells fromperipheralblood	blood
22	chr15:74203600-74210400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
23	chr15:74203600-74213800	Weak transcription	H1 Cell Line	embryonic stem cell
24	chr15:74204000-74214000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
25	chr15:74204400-74208000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr15:74204400-74208200	Weak transcription	Primary T cells from cord blood	blood
27	chr15:74204400-74211400	Weak transcription	Fetal Stomach	stomach
28	chr15:74204400-74212000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
29	chr15:74204400-74212000	Weak transcription	Aorta	Aorta
30	chr15:74206000-74207800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
31	chr15:74206600-74207600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
32	chr15:74206600-74208800	Enhancers	Stomach Mucosa	stomach
33	chr15:74206600-74208800	Enhancers	Hela-S3	cervix
34	chr15:74206600-74210400	Weak transcription	Primary T helper cells PMA-I stimulated	--
35	chr15:74206800-74208800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
36	chr15:74206800-74210400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
37	chr15:74206800-74213400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
38	chr15:74207000-74207600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
39	chr15:74207000-74208400	Weak transcription	Primary hematopoietic stem cells	blood
40	chr15:74207000-74208600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
41	chr15:74207000-74208600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
42	chr15:74207000-74208600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
43	chr15:74207000-74210200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
44	chr15:74207000-74210400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
45	chr15:74207000-74210400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
46	chr15:74207000-74211800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
47	chr15:74207000-74212000	Weak transcription	Placenta	Placenta
48	chr15:74207000-74213600	Weak transcription	Left Ventricle	heart
49	chr15:74207000-74214200	Weak transcription	H9 Cell Line	embryonic stem cell
50	chr15:74207400-74207600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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