Variant report

Variant	rs744617
Chromosome Location	chr15:74163023-74163024
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11574481	1.00[MEX][hapmap]
rs11629922	0.83[AMR][1000 genomes]
rs12902790	1.00[MEX][hapmap];1.00[AMR][1000 genomes]
rs1440102	1.00[MEX][hapmap]
rs1452393	1.00[AMR][1000 genomes]
rs1452395	0.83[AMR][1000 genomes]
rs2053960	0.83[AMR][1000 genomes]
rs2123210	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4886713	0.83[AMR][1000 genomes]
rs57510724	0.83[AMR][1000 genomes]
rs59374297	0.83[AMR][1000 genomes]
rs59404362	0.83[AMR][1000 genomes]
rs60206098	0.83[AMR][1000 genomes]
rs7168488	0.83[AMR][1000 genomes]
rs7176250	0.83[AMR][1000 genomes]
rs7178358	1.00[MEX][hapmap];1.00[AMR][1000 genomes]
rs7179085	0.81[YRI][hapmap]
rs744620	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs744621	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8027445	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043335	chr15:74078689-74241186	Weak transcription Flanking Active TSS Strong transcription Enhancers Bivalent Enhancer Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:74154800-74167000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr15:74158600-74164600	Enhancers	Right Atrium	heart
3	chr15:74160000-74163400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr15:74161400-74163400	Weak transcription	Ovary	ovary
5	chr15:74161600-74163800	Enhancers	Left Ventricle	heart
6	chr15:74161600-74164600	Enhancers	Right Ventricle	heart
7	chr15:74162600-74164600	Enhancers	Fetal Intestine Large	intestine
8	chr15:74162600-74164800	Enhancers	Fetal Intestine Small	intestine
9	chr15:74163000-74163200	Enhancers	Duodenum Mucosa	Duodenum
10	chr15:74163000-74163200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
11	chr15:74163000-74163200	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
12	chr15:74163000-74163400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr15:74163000-74164600	Enhancers	Stomach Mucosa	stomach
14	chr15:74163000-74164600	Enhancers	Thymus	Thymus

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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