Variant report

Variant	rs744620
Chromosome Location	chr15:74162558-74162559
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11629922	0.83[AMR][1000 genomes]
rs12902790	1.00[AMR][1000 genomes]
rs1452393	1.00[AMR][1000 genomes]
rs1452395	0.83[AMR][1000 genomes]
rs2053960	0.83[AMR][1000 genomes]
rs2123210	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4886713	0.83[AMR][1000 genomes]
rs57510724	0.83[AMR][1000 genomes]
rs59374297	0.83[AMR][1000 genomes]
rs59404362	0.83[AMR][1000 genomes]
rs60206098	0.83[AMR][1000 genomes]
rs7168488	0.83[AMR][1000 genomes]
rs7176250	0.83[AMR][1000 genomes]
rs7178358	1.00[AMR][1000 genomes]
rs744617	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs744621	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043335	chr15:74078689-74241186	Weak transcription Flanking Active TSS Strong transcription Enhancers Bivalent Enhancer Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:74154800-74167000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr15:74158600-74164600	Enhancers	Right Atrium	heart
3	chr15:74159800-74162600	Weak transcription	Fetal Intestine Small	intestine
4	chr15:74160000-74163400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr15:74161400-74163400	Weak transcription	Ovary	ovary
6	chr15:74161600-74163800	Enhancers	Left Ventricle	heart
7	chr15:74161600-74164600	Enhancers	Right Ventricle	heart
8	chr15:74161800-74163000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links