Variant report

Variant	rs11574481
Chromosome Location	chr15:73995816-73995817
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:73975489..73977527-chr15:73994222..73997098,2	MCF-7	breast:
2	chr15:73993873..73996840-chr15:74002371..74004783,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000103855	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11574470	0.87[AMR][1000 genomes]
rs12902790	1.00[MEX][hapmap]
rs16958143	0.88[YRI][hapmap]
rs28407274	0.87[AMR][1000 genomes]
rs28568412	0.87[AMR][1000 genomes]
rs28593036	0.87[AMR][1000 genomes]
rs7178358	1.00[MEX][hapmap]
rs744617	1.00[MEX][hapmap]
rs8027445	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3448312	chr15:73995047-73996564	Strong transcription Weak transcription Enhancers Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:98 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:73978800-74000800	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr15:73979400-73996400	Weak transcription	A549	lung
3	chr15:73988800-73996200	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr15:73989600-73996200	Weak transcription	Duodenum Mucosa	Duodenum
5	chr15:73989600-73996800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr15:73989800-73996400	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr15:73989800-73996800	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr15:73989800-73997000	Weak transcription	Hela-S3	cervix
9	chr15:73989800-74000600	Weak transcription	Esophagus	oesophagus
10	chr15:73989800-74001600	Strong transcription	Fetal Intestine Small	intestine
11	chr15:73989800-74008800	Weak transcription	Small Intestine	intestine
12	chr15:73990000-73996200	Weak transcription	Rectal Mucosa Donor 31	rectum
13	chr15:73990000-73997600	Weak transcription	Fetal Kidney	kidney
14	chr15:73990000-73999800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr15:73990000-74012000	Weak transcription	Fetal Brain Male	brain
16	chr15:73990200-74007200	Weak transcription	Stomach Mucosa	stomach
17	chr15:73990200-74007600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr15:73990400-74007200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr15:73990400-74007600	Strong transcription	Fetal Stomach	stomach
20	chr15:73990600-73996800	Weak transcription	Fetal Lung	lung
21	chr15:73990600-73999400	Weak transcription	Left Ventricle	heart
22	chr15:73990600-74006600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
23	chr15:73990600-74007400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr15:73990600-74018800	Weak transcription	Right Atrium	heart
25	chr15:73990800-73996200	Weak transcription	Skeletal Muscle Male	skeletal muscle
26	chr15:73990800-73996400	Weak transcription	Rectal Smooth Muscle	rectum
27	chr15:73990800-73996400	Weak transcription	Skeletal Muscle Female	skeletal muscle
28	chr15:73990800-73997400	Weak transcription	Brain Substantia Nigra	brain
29	chr15:73990800-73997600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr15:73990800-74009200	Weak transcription	Psoas Muscle	Psoas
31	chr15:73991000-74003400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
32	chr15:73991200-74001600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr15:73991400-74004800	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
34	chr15:73991400-74007200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
35	chr15:73991800-73997000	Weak transcription	HSMMtube	muscle
36	chr15:73992000-73997000	Weak transcription	HSMM	muscle
37	chr15:73992200-74007400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
38	chr15:73992600-73996800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
39	chr15:73992600-73997000	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
40	chr15:73992600-74000600	Weak transcription	Brain Angular Gyrus	brain
41	chr15:73992600-74002400	Weak transcription	Fetal Heart	heart
42	chr15:73992600-74007400	Strong transcription	Fetal Muscle Trunk	muscle
43	chr15:73992800-73996400	Weak transcription	Brain Anterior Caudate	brain
44	chr15:73992800-73996600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
45	chr15:73992800-73996600	Weak transcription	HepG2	liver
46	chr15:73992800-73997000	Weak transcription	HUES48 Cell Line	embryonic stem cell
47	chr15:73992800-73997000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
48	chr15:73992800-73997000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
49	chr15:73992800-73997400	Strong transcription	Fetal Muscle Leg	muscle
50	chr15:73992800-73999000	Weak transcription	Brain Hippocampus Middle	brain

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