Variant report

Variant	rs11574470
Chromosome Location	chr15:73989175-73989176
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr15:73989160-73989850	HUVEC	blood vessel:	n/a	n/a
2	POLR2A	chr15:73989042-73989865	PFSK-1	brain:	n/a	n/a
3	POLR2A	chr15:73989017-73989834	PFSK-1	brain:	n/a	n/a
4	TCF12	chr15:73989110-73989928	SK-N-SH	brain:	n/a	chr15:73989766-73989774
5	EP300	chr15:73989154-73989945	SK-N-SH	brain:	n/a	n/a
6	MAFK	chr15:73989107-73989930	IMR90	lung:	n/a	chr15:73989532-73989552 chr15:73989539-73989548 chr15:73989535-73989549 chr15:73989531-73989546 chr15:73989536-73989545 chr15:73989534-73989550 chr15:73989538-73989548
7	MAFK	chr15:73988977-73989968	GM12878	blood:	n/a	chr15:73989532-73989552 chr15:73989539-73989548 chr15:73989535-73989549 chr15:73989531-73989546 chr15:73989536-73989545 chr15:73989534-73989550 chr15:73989538-73989548
8	MXI1	chr15:73989158-73989978	SK-N-SH	brain:	n/a	n/a
9	RAD21	chr15:73989161-73989713	IMR90	lung:	n/a	chr15:73989676-73989690 chr15:73989678-73989692
10	NFIC	chr15:73989146-73989902	SK-N-SH	brain:	n/a	chr15:73989490-73989507
11	MAZ	chr15:73988792-73989977	IMR90	lung:	n/a	chr15:73989715-73989725
12	POLR2A	chr15:73988990-73989189	HepG2	liver:	n/a	n/a
13	TCF12	chr15:73989127-73990002	SK-N-SH	brain:	n/a	chr15:73989766-73989774
14	ZNF263	chr15:73988460-73989586	HEK293-T-REx	kidney:	n/a	n/a
15	ELF1	chr15:73989149-73989849	GM12878	blood:	n/a	chr15:73989577-73989590 chr15:73989566-73989575 chr15:73989562-73989575

No.	Distal block	Cell Line	Cell type
1	chr15:73983004..73985987-chr15:73987147..73989619,3	MCF-7	breast:
2	chr15:73939318..73941377-chr15:73986958..73989689,2	MCF-7	breast:
3	chr15:73975048..73981150-chr15:73987719..73994346,13	MCF-7	breast:
4	chr15:73925828..73927770-chr15:73988437..73990338,2	MCF-7	breast:

Variant related genes	Relation type
CD276	TF binding region
ENSG00000156642	Chromatin interaction
ENSG00000103855	Chromatin interaction

rs_ID	r²[population]
rs11574481	0.87[AMR][1000 genomes]
rs16958143	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs28407274	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28568412	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28593036	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:73978800-74000800	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr15:73979400-73996400	Weak transcription	A549	lung
3	chr15:73981800-73995000	Weak transcription	Pancreas	Pancrea
4	chr15:73982600-73990000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr15:73984600-73989200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr15:73984600-73992000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr15:73984600-73995400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr15:73985400-73989800	Enhancers	Right Ventricle	heart
9	chr15:73985400-73990600	Enhancers	Left Ventricle	heart
10	chr15:73985400-73993600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr15:73986000-73989200	Enhancers	Primary hematopoietic stem cells short term culture	blood
12	chr15:73986000-73989400	Enhancers	Stomach Smooth Muscle	stomach
13	chr15:73986000-73990200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr15:73986000-73990400	Enhancers	NHDF-Ad	bronchial
15	chr15:73986200-73989800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr15:73986200-73989800	Enhancers	Fetal Heart	heart
17	chr15:73986200-73989800	Enhancers	Psoas Muscle	Psoas
18	chr15:73986200-73990600	Enhancers	Adipose Nuclei	Adipose
19	chr15:73986400-73989600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr15:73986400-73989600	Enhancers	Rectal Smooth Muscle	rectum
21	chr15:73986400-73990200	Enhancers	Cortex derived primary cultured neurospheres	brain
22	chr15:73986400-73990600	Enhancers	Fetal Lung	lung
23	chr15:73986600-73990400	Enhancers	HMEC	breast
24	chr15:73986800-73990000	Enhancers	ES-I3 Cell Line	embryonic stem cell
25	chr15:73986800-73990000	Enhancers	HUES6 Cell Line	embryonic stem cell
26	chr15:73986800-73990200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr15:73986800-73990400	Enhancers	NHLF	lung
28	chr15:73986800-73992200	Weak transcription	HepG2	liver
29	chr15:73987000-73989200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
30	chr15:73987000-73990800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr15:73987200-73989200	Enhancers	Skeletal Muscle Female	skeletal muscle
32	chr15:73987200-73989600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
33	chr15:73987400-73989200	Weak transcription	Aorta	Aorta
34	chr15:73987400-73989200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
35	chr15:73987400-73989600	Enhancers	iPS-20b Cell Line	embryonic stem cell
36	chr15:73987800-73989200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
37	chr15:73987800-73990200	Enhancers	Fetal Muscle Leg	muscle
38	chr15:73988000-73989600	Enhancers	iPS-18 Cell Line	embryonic stem cell
39	chr15:73988000-73989800	Enhancers	Lung	lung
40	chr15:73988000-73990000	Enhancers	Right Atrium	heart
41	chr15:73988000-73990000	Bivalent Enhancer	Monocytes-CD14+_RO01746	blood
42	chr15:73988000-73990200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
43	chr15:73988000-73990400	Enhancers	Spleen	Spleen
44	chr15:73988000-73990800	Enhancers	Primary hematopoietic stem cells	blood
45	chr15:73988200-73989200	Enhancers	Muscle Satellite Cultured Cells	--
46	chr15:73988200-73989400	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
47	chr15:73988200-73989400	Flanking Active TSS	NHEK	skin
48	chr15:73988200-73989600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
49	chr15:73988200-73989800	Enhancers	Liver	Liver
50	chr15:73988200-73989800	Enhancers	Colonic Mucosa	Colon

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