Variant report

Variant	rs28407274
Chromosome Location	chr15:73988547-73988548
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr15:73988528-73988559	MCF-7	breast:	n/a	n/a
2	FOS	chr15:73988400-73988622	MCF10A-Er-Src	breast:	n/a	chr15:73988534-73988545 chr15:73988531-73988543 chr15:73988533-73988542 chr15:73988532-73988541 chr15:73988532-73988542
3	FOS	chr15:73988485-73988607	MCF10A-Er-Src	breast:	n/a	chr15:73988534-73988545 chr15:73988531-73988543 chr15:73988533-73988542 chr15:73988532-73988541 chr15:73988532-73988542
4	MYC	chr15:73988437-73988794	MCF10A-Er-Src	breast:	n/a	chr15:73988657-73988667
5	FOS	chr15:73988487-73988601	MCF10A-Er-Src	breast:	n/a	chr15:73988534-73988545 chr15:73988531-73988543 chr15:73988533-73988542 chr15:73988532-73988541 chr15:73988532-73988542
6	MYC	chr15:73988491-73988744	MCF10A-Er-Src	breast:	n/a	chr15:73988657-73988667
7	ZNF263	chr15:73988460-73989586	HEK293-T-REx	kidney:	n/a	n/a
8	FOS	chr15:73988451-73988656	MCF10A-Er-Src	breast:	n/a	chr15:73988534-73988545 chr15:73988531-73988543 chr15:73988533-73988542 chr15:73988532-73988541 chr15:73988532-73988542

No.	Distal block	Cell Line	Cell type
1	chr15:73983004..73985987-chr15:73987147..73989619,3	MCF-7	breast:
2	chr15:73939318..73941377-chr15:73986958..73989689,2	MCF-7	breast:
3	chr15:73962715..73965084-chr15:73986509..73988658,2	MCF-7	breast:
4	chr15:73975048..73981150-chr15:73987719..73994346,13	MCF-7	breast:
5	chr15:73987752..73988860-chr15:74002088..74003109,20	MCF-7	breast:
6	chr15:73987848..73988819-chr15:74002175..74003049,9	MCF-7	breast:
7	chr15:73925828..73927770-chr15:73988437..73990338,2	MCF-7	breast:

Variant related genes	Relation type
CD276	TF binding region
ENSG00000103855	Chromatin interaction
ENSG00000156642	Chromatin interaction

rs_ID	r²[population]
rs11574470	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11574481	0.87[AMR][1000 genomes]
rs16958143	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs28568412	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28593036	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Chromatin state (count:106 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:73978800-73989000	Weak transcription	Fetal Kidney	kidney
2	chr15:73978800-74000800	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr15:73979400-73989000	Weak transcription	Fetal Intestine Large	intestine
4	chr15:73979400-73996400	Weak transcription	A549	lung
5	chr15:73981800-73995000	Weak transcription	Pancreas	Pancrea
6	chr15:73982600-73990000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr15:73984200-73988800	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr15:73984400-73988600	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr15:73984400-73989000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr15:73984600-73989000	Weak transcription	Hela-S3	cervix
11	chr15:73984600-73989200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr15:73984600-73992000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
13	chr15:73984600-73995400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr15:73985400-73989800	Enhancers	Right Ventricle	heart
15	chr15:73985400-73990600	Enhancers	Left Ventricle	heart
16	chr15:73985400-73993600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr15:73986000-73989200	Enhancers	Primary hematopoietic stem cells short term culture	blood
18	chr15:73986000-73989400	Enhancers	Stomach Smooth Muscle	stomach
19	chr15:73986000-73990200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr15:73986000-73990400	Enhancers	NHDF-Ad	bronchial
21	chr15:73986200-73989800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr15:73986200-73989800	Enhancers	Fetal Heart	heart
23	chr15:73986200-73989800	Enhancers	Psoas Muscle	Psoas
24	chr15:73986200-73990600	Enhancers	Adipose Nuclei	Adipose
25	chr15:73986400-73988600	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr15:73986400-73989000	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr15:73986400-73989600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr15:73986400-73989600	Enhancers	Rectal Smooth Muscle	rectum
29	chr15:73986400-73990200	Enhancers	Cortex derived primary cultured neurospheres	brain
30	chr15:73986400-73990600	Enhancers	Fetal Lung	lung
31	chr15:73986600-73990400	Enhancers	HMEC	breast
32	chr15:73986800-73988600	Weak transcription	Fetal Brain Female	brain
33	chr15:73986800-73989000	Weak transcription	Brain Angular Gyrus	brain
34	chr15:73986800-73989000	Weak transcription	Brain Anterior Caudate	brain
35	chr15:73986800-73989000	Weak transcription	Small Intestine	intestine
36	chr15:73986800-73990000	Enhancers	ES-I3 Cell Line	embryonic stem cell
37	chr15:73986800-73990000	Enhancers	HUES6 Cell Line	embryonic stem cell
38	chr15:73986800-73990200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr15:73986800-73990400	Enhancers	NHLF	lung
40	chr15:73986800-73992200	Weak transcription	HepG2	liver
41	chr15:73987000-73988600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
42	chr15:73987000-73989200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
43	chr15:73987000-73990800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
44	chr15:73987200-73988600	Weak transcription	Stomach Mucosa	stomach
45	chr15:73987200-73988800	Genic enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
46	chr15:73987200-73989000	Weak transcription	Brain Inferior Temporal Lobe	brain
47	chr15:73987200-73989000	Weak transcription	Rectal Mucosa Donor 31	rectum
48	chr15:73987200-73989200	Enhancers	Skeletal Muscle Female	skeletal muscle
49	chr15:73987200-73989600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
50	chr15:73987400-73988600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin

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