Variant report

Variant	rs28568412
Chromosome Location	chr15:73987762-73987763
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:73983004..73985987-chr15:73987147..73989619,3	MCF-7	breast:
2	chr15:73939318..73941377-chr15:73986958..73989689,2	MCF-7	breast:
3	chr15:73962715..73965084-chr15:73986509..73988658,2	MCF-7	breast:
4	chr15:73975048..73981150-chr15:73987719..73994346,13	MCF-7	breast:
5	chr15:73924881..73927560-chr15:73986387..73988157,2	MCF-7	breast:
6	chr15:73987752..73988860-chr15:74002088..74003109,20	MCF-7	breast:

Variant related genes	Relation type
ENSG00000103855	Chromatin interaction
ENSG00000156642	Chromatin interaction

rs_ID	r²[population]
rs11574470	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11574481	0.87[AMR][1000 genomes]
rs16958143	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs28407274	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28593036	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Chromatin state (count:102 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:73978800-73989000	Weak transcription	Fetal Kidney	kidney
2	chr15:73978800-74000800	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr15:73979400-73989000	Weak transcription	Fetal Intestine Large	intestine
4	chr15:73979400-73996400	Weak transcription	A549	lung
5	chr15:73980200-73988400	Weak transcription	Rectal Mucosa Donor 29	rectum
6	chr15:73980600-73988400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr15:73980600-73988400	Weak transcription	Brain Cingulate Gyrus	brain
8	chr15:73981400-73988000	Weak transcription	Spleen	Spleen
9	chr15:73981800-73995000	Weak transcription	Pancreas	Pancrea
10	chr15:73982600-73990000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr15:73984200-73988000	Weak transcription	Brain Substantia Nigra	brain
12	chr15:73984200-73988200	Weak transcription	HUVEC	blood vessel
13	chr15:73984200-73988800	Weak transcription	Sigmoid Colon	Sigmoid Colon
14	chr15:73984400-73987800	Weak transcription	H9 Cell Line	embryonic stem cell
15	chr15:73984400-73988000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
16	chr15:73984400-73988000	Weak transcription	Brain Germinal Matrix	brain
17	chr15:73984400-73988600	Weak transcription	HUES64 Cell Line	embryonic stem cell
18	chr15:73984400-73989000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
19	chr15:73984600-73987800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
20	chr15:73984600-73988200	Weak transcription	Colonic Mucosa	Colon
21	chr15:73984600-73988400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
22	chr15:73984600-73988400	Weak transcription	Placenta Amnion	Placenta Amnion
23	chr15:73984600-73989000	Weak transcription	Hela-S3	cervix
24	chr15:73984600-73989200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
25	chr15:73984600-73992000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
26	chr15:73984600-73995400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr15:73985400-73989800	Enhancers	Right Ventricle	heart
28	chr15:73985400-73990600	Enhancers	Left Ventricle	heart
29	chr15:73985400-73993600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr15:73986000-73987800	Enhancers	Liver	Liver
31	chr15:73986000-73987800	Enhancers	Fetal Brain Male	brain
32	chr15:73986000-73987800	Enhancers	HSMMtube	muscle
33	chr15:73986000-73988200	Genic enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
34	chr15:73986000-73989200	Enhancers	Primary hematopoietic stem cells short term culture	blood
35	chr15:73986000-73989400	Enhancers	Stomach Smooth Muscle	stomach
36	chr15:73986000-73990200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
37	chr15:73986000-73990400	Enhancers	NHDF-Ad	bronchial
38	chr15:73986200-73988000	Genic enhancers	Fetal Adrenal Gland	Adrenal Gland
39	chr15:73986200-73989800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
40	chr15:73986200-73989800	Enhancers	Fetal Heart	heart
41	chr15:73986200-73989800	Enhancers	Psoas Muscle	Psoas
42	chr15:73986200-73990600	Enhancers	Adipose Nuclei	Adipose
43	chr15:73986400-73988600	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
44	chr15:73986400-73989000	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
45	chr15:73986400-73989600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
46	chr15:73986400-73989600	Enhancers	Rectal Smooth Muscle	rectum
47	chr15:73986400-73990200	Enhancers	Cortex derived primary cultured neurospheres	brain
48	chr15:73986400-73990600	Enhancers	Fetal Lung	lung
49	chr15:73986600-73987800	Enhancers	Brain Hippocampus Middle	brain
50	chr15:73986600-73988200	Strong transcription	Fetal Intestine Small	intestine

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