Variant report

Variant	rs7170291
Chromosome Location	chr15:74173638-74173639
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11855607	0.85[CHB][hapmap];0.90[YRI][hapmap]
rs11857394	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13638	0.93[CEU][hapmap]
rs16958415	0.87[CHB][hapmap];0.91[YRI][hapmap]
rs2084851	0.81[CHB][hapmap]
rs2290346	0.87[CHB][hapmap]
rs4445847	0.81[CHB][hapmap]
rs4886725	0.94[CHB][hapmap]
rs7179978	0.88[CHB][hapmap]
rs72745338	0.85[EUR][1000 genomes]
rs744616	0.93[CEU][hapmap];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7496005	0.94[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043335	chr15:74078689-74241186	Weak transcription Flanking Active TSS Strong transcription Enhancers Bivalent Enhancer Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:74169200-74174200	Weak transcription	Fetal Intestine Large	intestine
2	chr15:74170400-74175200	Weak transcription	Fetal Intestine Small	intestine
3	chr15:74173000-74174200	Weak transcription	Duodenum Mucosa	Duodenum
4	chr15:74173600-74173800	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin01	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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