Variant report
| Variant | rs16958415 |
|---|---|
| Chromosome Location | chr15:74168175-74168176 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:2)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:2 , 50 per page) page:
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| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | CTCF | chr15:74168060-74168210 | HUVEC | blood vessel: | n/a | n/a |
| 2 | POLR2A | chr15:74168003-74168203 | MCF10A-Er-Src | breast: | n/a | n/a |
| No data |
(count:2 , 50 per page) page:
1
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000260624 | TF binding region |
| ENSG00000261801 | Chromatin interaction |
| ENSG00000129038 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:29)
| rs_ID | r2[population] |
|---|---|
| rs11855607 | 1.00[CHB][hapmap];0.85[JPT][hapmap];1.00[YRI][hapmap];0.80[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[ASN][1000 genomes] |
| rs16958297 | 0.85[JPT][hapmap] |
| rs16958382 | 1.00[EUR][1000 genomes] |
| rs16958390 | 1.00[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs16958445 | 0.88[GIH][hapmap] |
| rs1869177 | 1.00[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs2084851 | 0.94[CHB][hapmap] |
| rs2290346 | 1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs3935254 | 0.82[AFR][1000 genomes];0.83[ASN][1000 genomes] |
| rs4445847 | 0.94[CHB][hapmap];0.80[CHD][hapmap] |
| rs4528522 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs57180956 | 1.00[EUR][1000 genomes] |
| rs58309771 | 1.00[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs58443873 | 1.00[EUR][1000 genomes] |
| rs58594871 | 1.00[EUR][1000 genomes] |
| rs59778825 | 0.94[ASN][1000 genomes] |
| rs60302365 | 1.00[EUR][1000 genomes] |
| rs60541198 | 0.83[ASN][1000 genomes] |
| rs60856646 | 0.94[ASN][1000 genomes] |
| rs61661320 | 1.00[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs7170291 | 0.87[CHB][hapmap];0.91[YRI][hapmap] |
| rs7178137 | 0.84[ASN][1000 genomes] |
| rs7178413 | 0.84[ASN][1000 genomes] |
| rs7179621 | 0.84[ASN][1000 genomes] |
| rs7179978 | 1.00[CHB][hapmap] |
| rs744619 | 0.87[ASN][1000 genomes] |
| rs8029844 | 0.82[AFR][1000 genomes] |
| rs8035582 | 0.83[AFR][1000 genomes] |
| rs878322 | 0.81[AFR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1043335 | chr15:74078689-74241186 | Weak transcription Flanking Active TSS Strong transcription Enhancers Bivalent Enhancer Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 17 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr15:74167800-74168400 | Enhancers | Fetal Intestine Small | intestine |
| 2 | chr15:74167800-74169200 | Enhancers | Fetal Intestine Large | intestine |
