Variant report

Variant	rs8029844
Chromosome Location	chr15:74193472-74193473
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11855607	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs16958415	0.93[CHB][hapmap];0.81[CHD][hapmap];0.87[LWK][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes]
rs2084851	0.87[CHB][hapmap]
rs2290346	0.93[CHB][hapmap]
rs3935254	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4445847	0.87[CHB][hapmap]
rs4528522	0.82[AFR][1000 genomes]
rs59778825	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs60856646	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs71434216	0.93[ASN][1000 genomes]
rs7170291	0.81[CHB][hapmap];0.91[YRI][hapmap]
rs7179978	0.93[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8035582	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043335	chr15:74078689-74241186	Weak transcription Flanking Active TSS Strong transcription Enhancers Bivalent Enhancer Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv1603	chr15:74191222-74235733	Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:74188800-74204000	Weak transcription	Right Atrium	heart
2	chr15:74189000-74193800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr15:74190000-74203400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
4	chr15:74190600-74194800	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr15:74191600-74194600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr15:74191800-74194400	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr15:74191800-74203600	Weak transcription	Primary T cells from cord blood	blood
8	chr15:74192200-74203400	Weak transcription	Aorta	Aorta
9	chr15:74192600-74196800	Weak transcription	Fetal Brain Male	brain
10	chr15:74192600-74207400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr15:74192600-74214000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr15:74193000-74194800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr15:74193000-74198800	Weak transcription	HSMM	muscle
14	chr15:74193200-74198600	Weak transcription	HSMMtube	muscle
15	chr15:74193400-74193800	Weak transcription	NH-A	brain
16	chr15:74193400-74194800	Weak transcription	NHDF-Ad	bronchial
17	chr15:74193400-74195000	Weak transcription	Brain Germinal Matrix	brain
18	chr15:74193400-74200600	Weak transcription	Fetal Brain Female	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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