Variant report

Variant	rs60856646
Chromosome Location	chr15:74180605-74180606
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11855607	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16958415	0.94[ASN][1000 genomes]
rs1869177	0.85[ASN][1000 genomes]
rs2290346	0.90[ASN][1000 genomes]
rs3935254	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4528522	0.94[ASN][1000 genomes]
rs58309771	0.90[ASN][1000 genomes]
rs59778825	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61661320	0.83[ASN][1000 genomes]
rs7179978	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs744619	0.81[ASN][1000 genomes]
rs8029844	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs878322	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043335	chr15:74078689-74241186	Weak transcription Flanking Active TSS Strong transcription Enhancers Bivalent Enhancer Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:74175600-74183800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr15:74180600-74180800	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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