Variant report

Variant	rs61661320
Chromosome Location	chr15:74158482-74158483
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:74157808..74159622-chr15:74181931..74184133,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000222064	Chromatin interaction

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10519016	1.00[AMR][1000 genomes]
rs11855607	0.82[ASN][1000 genomes]
rs12592471	1.00[AMR][1000 genomes]
rs16958297	1.00[AMR][1000 genomes]
rs16958333	1.00[AMR][1000 genomes]
rs16958334	1.00[AMR][1000 genomes]
rs16958379	1.00[AMR][1000 genomes]
rs16958382	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs16958390	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16958415	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1869177	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2290346	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35127778	1.00[AMR][1000 genomes]
rs4528522	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4996372	1.00[AMR][1000 genomes]
rs57180956	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs58309771	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs58443873	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs58492359	1.00[AMR][1000 genomes]
rs58594871	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs59778825	0.83[ASN][1000 genomes]
rs60302365	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs60541198	0.93[ASN][1000 genomes]
rs60856646	0.83[ASN][1000 genomes]
rs61319694	1.00[AMR][1000 genomes]
rs7178137	0.94[ASN][1000 genomes]
rs7178413	0.94[ASN][1000 genomes]
rs7179621	0.94[ASN][1000 genomes]
rs74023570	1.00[AMR][1000 genomes]
rs744619	0.83[ASN][1000 genomes]
rs8023384	1.00[AMR][1000 genomes]
rs8030364	1.00[AMR][1000 genomes]
rs8031663	1.00[AMR][1000 genomes]
rs878322	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043335	chr15:74078689-74241186	Weak transcription Flanking Active TSS Strong transcription Enhancers Bivalent Enhancer Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:74149600-74158600	Weak transcription	Right Atrium	heart
2	chr15:74154800-74167000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr15:74155000-74159000	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr15:74155000-74159000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr15:74155000-74159000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr15:74155000-74159400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr15:74155000-74159600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr15:74155200-74159000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
9	chr15:74157800-74159200	Enhancers	Thymus	Thymus
10	chr15:74157800-74159600	Enhancers	Fetal Thymus	thymus
11	chr15:74158000-74158600	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
12	chr15:74158000-74158600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
13	chr15:74158000-74158600	Enhancers	Primary T helper cells PMA-I stimulated	--
14	chr15:74158000-74158600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
15	chr15:74158000-74158600	Enhancers	GM12878-XiMat	blood
16	chr15:74158000-74158800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
17	chr15:74158000-74159000	Enhancers	Primary T helper naive cells from peripheral blood	blood
18	chr15:74158000-74160000	Enhancers	Fetal Intestine Large	intestine
19	chr15:74158200-74158600	Weak transcription	H9 Cell Line	embryonic stem cell
20	chr15:74158200-74158800	Enhancers	Stomach Mucosa	stomach
21	chr15:74158200-74159000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
22	chr15:74158200-74159600	Enhancers	Duodenum Mucosa	Duodenum
23	chr15:74158200-74159800	Enhancers	Fetal Intestine Small	intestine
24	chr15:74158400-74158800	Weak transcription	H1 Cell Line	embryonic stem cell
25	chr15:74158400-74158800	Enhancers	Primary T cells from cord blood	blood
26	chr15:74158400-74159200	Enhancers	Gastric	stomach
27	chr15:74158400-74159200	Enhancers	HepG2	liver
28	chr15:74158400-74160000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

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