Variant report

Variant	rs12592471
Chromosome Location	chr15:74107897-74107898
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:74080984..74083253-chr15:74106432..74109380,2	MCF-7	breast:
2	chr15:74099206..74103893-chr15:74105656..74108218,4	MCF-7	breast:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10519015	0.99[ASN][1000 genomes]
rs10519016	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11636381	0.86[ASN][1000 genomes]
rs11636619	0.84[ASN][1000 genomes]
rs16958297	0.93[GIH][hapmap];0.93[JPT][hapmap];0.91[MKK][hapmap];1.00[TSI][hapmap];0.82[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16958333	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16958334	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16958379	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16958382	1.00[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs16958415	0.84[CHD][hapmap];0.93[JPT][hapmap]
rs1869177	1.00[AMR][1000 genomes]
rs2290346	0.81[CHD][hapmap];0.93[JPT][hapmap]
rs35127778	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35809461	0.82[ASN][1000 genomes]
rs4996372	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57180956	0.82[ASN][1000 genomes]
rs58443873	1.00[AMR][1000 genomes]
rs58492359	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58594871	1.00[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs60302365	1.00[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs61319694	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61661320	1.00[AMR][1000 genomes]
rs74023570	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs746655	1.00[ASN][1000 genomes]
rs8023384	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8030364	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8031663	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs878322	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043335	chr15:74078689-74241186	Weak transcription Flanking Active TSS Strong transcription Enhancers Bivalent Enhancer Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:74097800-74110200	Weak transcription	Brain Germinal Matrix	brain
2	chr15:74105600-74109800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr15:74106200-74110200	Weak transcription	Fetal Brain Female	brain
4	chr15:74107000-74110400	Weak transcription	Fetal Brain Male	brain

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