Variant report
| Variant | rs10519015 |
|---|---|
| Chromosome Location | chr15:74125955-74125956 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr15:74124139..74126479-chr15:74128351..74130285,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:30)
| rs_ID | r2[population] |
|---|---|
| rs10519016 | 1.00[ASN][1000 genomes] |
| rs11574481 | 1.00[MEX][hapmap] |
| rs11636381 | 0.87[ASN][1000 genomes] |
| rs11636619 | 0.85[ASN][1000 genomes] |
| rs12592471 | 0.99[ASN][1000 genomes] |
| rs12902790 | 1.00[MEX][hapmap] |
| rs1440102 | 1.00[MEX][hapmap] |
| rs16958297 | 0.86[GIH][hapmap];0.93[JPT][hapmap] |
| rs16958333 | 0.99[ASN][1000 genomes] |
| rs16958334 | 0.99[ASN][1000 genomes] |
| rs16958379 | 0.99[ASN][1000 genomes] |
| rs16958382 | 0.85[ASN][1000 genomes] |
| rs16958415 | 0.83[CHD][hapmap];0.93[JPT][hapmap] |
| rs2290346 | 0.80[CHD][hapmap];0.93[JPT][hapmap] |
| rs35127778 | 0.99[ASN][1000 genomes] |
| rs35809461 | 0.83[ASN][1000 genomes] |
| rs4996372 | 0.99[ASN][1000 genomes] |
| rs57180956 | 0.83[ASN][1000 genomes] |
| rs58492359 | 0.99[ASN][1000 genomes] |
| rs58594871 | 0.83[ASN][1000 genomes] |
| rs60302365 | 0.83[ASN][1000 genomes] |
| rs61319694 | 0.99[ASN][1000 genomes] |
| rs7178358 | 1.00[MEX][hapmap] |
| rs74023570 | 0.99[ASN][1000 genomes] |
| rs744617 | 1.00[MEX][hapmap] |
| rs746655 | 0.99[ASN][1000 genomes] |
| rs8023384 | 0.99[ASN][1000 genomes] |
| rs8027445 | 1.00[MEX][hapmap] |
| rs8030364 | 1.00[ASN][1000 genomes] |
| rs8031663 | 0.99[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1043335 | chr15:74078689-74241186 | Weak transcription Flanking Active TSS Strong transcription Enhancers Bivalent Enhancer Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 17 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr15:74122600-74128600 | Weak transcription | Spleen | Spleen |
