Variant report

Variant	rs16958297
Chromosome Location	chr15:74100495-74100496
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10519016	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12592471	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16958333	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16958334	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16958379	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16958382	1.00[AMR][1000 genomes]
rs16958415	0.85[JPT][hapmap]
rs1869177	1.00[AMR][1000 genomes]
rs2290346	0.85[JPT][hapmap]
rs35127778	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4996372	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58443873	1.00[AMR][1000 genomes]
rs58492359	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58594871	1.00[AMR][1000 genomes]
rs60302365	1.00[AMR][1000 genomes]
rs61319694	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61661320	1.00[AMR][1000 genomes]
rs74023570	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8023384	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8030364	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8031663	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs878322	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043335	chr15:74078689-74241186	Weak transcription Flanking Active TSS Strong transcription Enhancers Bivalent Enhancer Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:74089600-74101800	Weak transcription	Spleen	Spleen
2	chr15:74096400-74103000	Weak transcription	Right Ventricle	heart
3	chr15:74096600-74101600	Weak transcription	Right Atrium	heart
4	chr15:74096600-74101800	Weak transcription	Left Ventricle	heart
5	chr15:74096600-74102200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr15:74097800-74101800	Weak transcription	Brain Angular Gyrus	brain
7	chr15:74097800-74102000	Weak transcription	Brain Hippocampus Middle	brain
8	chr15:74097800-74110200	Weak transcription	Brain Germinal Matrix	brain
9	chr15:74098000-74101800	Weak transcription	Pancreatic Islets	Pancreatic Islet
10	chr15:74098000-74102200	Weak transcription	Brain Cingulate Gyrus	brain
11	chr15:74099000-74101800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr15:74099200-74101800	Weak transcription	Fetal Brain Female	brain
13	chr15:74099600-74101800	Weak transcription	Fetal Brain Male	brain
14	chr15:74100000-74101400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr15:74100000-74102600	Enhancers	HepG2	liver
16	chr15:74100200-74101600	Weak transcription	Cortex derived primary cultured neurospheres	brain
17	chr15:74100200-74105400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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