Variant report

Variant	rs1869177
Chromosome Location	chr15:74160556-74160557
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:74160251..74162988-chr15:74171471..74174133,2	K562	blood:

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10519016	1.00[AMR][1000 genomes]
rs11855607	0.91[CHB][hapmap];0.85[JPT][hapmap];0.84[ASN][1000 genomes]
rs12592471	1.00[AMR][1000 genomes]
rs16958297	0.85[JPT][hapmap];1.00[AMR][1000 genomes]
rs16958333	1.00[AMR][1000 genomes]
rs16958334	1.00[AMR][1000 genomes]
rs16958379	1.00[AMR][1000 genomes]
rs16958382	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs16958390	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16958415	1.00[ASW][hapmap];0.93[CHB][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.87[MKK][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2084851	0.87[CHB][hapmap]
rs2290346	0.93[CHB][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35127778	1.00[AMR][1000 genomes]
rs4445847	0.87[CHB][hapmap]
rs4528522	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4996372	1.00[AMR][1000 genomes]
rs57180956	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs58309771	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs58443873	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs58492359	1.00[AMR][1000 genomes]
rs58594871	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs59778825	0.85[ASN][1000 genomes]
rs60302365	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs60541198	0.91[ASN][1000 genomes]
rs60856646	0.85[ASN][1000 genomes]
rs61319694	1.00[AMR][1000 genomes]
rs61661320	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7170291	0.81[CHB][hapmap]
rs7178137	0.92[ASN][1000 genomes]
rs7178413	0.92[ASN][1000 genomes]
rs7179621	0.92[ASN][1000 genomes]
rs7179978	0.93[CHB][hapmap]
rs74023570	1.00[AMR][1000 genomes]
rs744619	0.85[ASN][1000 genomes]
rs8023384	1.00[AMR][1000 genomes]
rs8030364	1.00[AMR][1000 genomes]
rs8031663	1.00[AMR][1000 genomes]
rs878322	0.83[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043335	chr15:74078689-74241186	Weak transcription Flanking Active TSS Strong transcription Enhancers Bivalent Enhancer Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:74154800-74167000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr15:74158600-74164600	Enhancers	Right Atrium	heart
3	chr15:74158800-74161400	Enhancers	H1 Cell Line	embryonic stem cell
4	chr15:74159000-74160600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
5	chr15:74159000-74160600	Enhancers	Left Ventricle	heart
6	chr15:74159000-74161400	Enhancers	Ovary	ovary
7	chr15:74159400-74161000	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr15:74159600-74161600	Weak transcription	Right Ventricle	heart
9	chr15:74159800-74162600	Weak transcription	Fetal Intestine Small	intestine
10	chr15:74160000-74163400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr15:74160200-74160600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr15:74160200-74160800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
13	chr15:74160400-74160600	Bivalent Enhancer	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr15:74160400-74161800	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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