Variant report

Variant	rs60302365
Chromosome Location	chr15:74144953-74144954
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:74138906..74141483-chr15:74144572..74146899,2	MCF-7	breast:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10519015	0.83[ASN][1000 genomes]
rs10519016	1.00[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs12592471	1.00[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs1452388	0.85[ASN][1000 genomes]
rs16958297	1.00[AMR][1000 genomes]
rs16958333	1.00[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs16958334	1.00[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs16958379	1.00[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs16958382	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16958390	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16958415	1.00[EUR][1000 genomes]
rs1869177	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2290346	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs35127778	1.00[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs4528522	1.00[EUR][1000 genomes]
rs4996372	1.00[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs57180956	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs58309771	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs58443873	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs58492359	1.00[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs58594871	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60541198	0.94[ASN][1000 genomes]
rs61319694	1.00[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs61661320	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7178137	0.93[ASN][1000 genomes]
rs7178413	0.93[ASN][1000 genomes]
rs7179621	0.93[ASN][1000 genomes]
rs74023570	1.00[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs746655	0.82[ASN][1000 genomes]
rs8023384	1.00[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs8030364	1.00[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs8031663	1.00[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs878322	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043335	chr15:74078689-74241186	Weak transcription Flanking Active TSS Strong transcription Enhancers Bivalent Enhancer Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:74132400-74146600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr15:74142200-74146600	Weak transcription	Fetal Brain Male	brain

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